SeqAn3 3.4.0-rc.4
The Modern C++ library for sequence analysis.
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pairwise_alignment_concept.hpp
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1// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
2// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
3// SPDX-License-Identifier: BSD-3-Clause
4
10#pragma once
11
12#include <tuple>
13
14#include <seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp>
15#include <seqan3/utility/tuple/concept.hpp>
16
17namespace seqan3::detail
18{
19
30template <typename pairwise_alignment_t>
31concept pairwise_alignment = pair_like<pairwise_alignment_t>
32 && aligned_sequence<std::tuple_element_t<0, std::remove_reference_t<pairwise_alignment_t>>>
33 && aligned_sequence<std::tuple_element_t<1, std::remove_reference_t<pairwise_alignment_t>>>;
35
46template <typename pairwise_alignment_t>
47concept writable_pairwise_alignment =
48 pairwise_alignment<pairwise_alignment_t>
49 && writable_aligned_sequence<std::tuple_element_t<0, std::remove_reference_t<pairwise_alignment_t>>>
50 && writable_aligned_sequence<std::tuple_element_t<1, std::remove_reference_t<pairwise_alignment_t>>>;
52
53} // namespace seqan3::detail
aligned_sequence_concept.hpp
Includes the aligned_sequence and the related insert_gap and erase_gap functions to enable stl contai...
aligned_sequence
The generic concept for an aligned sequence.
pair_like
Whether a type behaves like a tuple with exactly two elements.
writable_aligned_sequence
The generic concept for an aligned sequence that is writable.
concept.hpp
Provides seqan3::tuple_like.
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