23namespace seqan3::detail
36template <
typename format_type>
37struct sequence_file_input_format_exposer :
public format_type
43 template <
typename... ts>
44 void read_sequence_record(ts &&... args)
46 format_type::read_sequence_record(std::forward<ts>(args)...);
69concept sequence_file_input_format =
requires (detail::sequence_file_input_format_exposer<t> & v,
71 sequence_file_input_options<dna5> & options,
79 { v.read_sequence_record(f, options, position_buffer,
seq,
id,
qual) } -> std::same_as<void>;
80 { v.read_sequence_record(f, options, position_buffer, seq_qual,
id, seq_qual) } -> std::same_as<void>;
82 v.read_sequence_record(f, options, position_buffer, std::ignore, std::ignore, std::ignore)
83 } -> std::same_as<void>;
88#if SEQAN3_DOXYGEN_ONLY(1) 0
137namespace seqan3::detail
146constexpr bool is_type_list_of_sequence_file_input_formats_v =
false;
153template <
typename... ts>
154constexpr bool is_type_list_of_sequence_file_input_formats_v<type_list<ts...>> =
155 (sequence_file_input_format<ts> && ...);
163concept type_list_of_sequence_file_input_formats = is_type_list_of_sequence_file_input_formats_v<t>;
Provides seqan3::dna5, container aliases and string literals.
@ id
The identifier, usually a string.
@ seq
The "sequence", usually a range of nucleotides or amino acids.
@ qual
The qualities, usually in Phred score notation.
The main SeqAn3 namespace.
Definition aligned_sequence_concept.hpp:26
Provides seqan3::phred42 quality scores.
Provides quality alphabet composites.
Provides seqan3::type_list.