seqan3::align_cfg::output_alignment Class Reference

Configures the alignment result to output the alignment. More...

#include <seqan3/alignment/configuration/align_config_output.hpp>

Inheritance diagram for seqan3::align_cfg::output_alignment:

Public Member Functions
Constructor, destructor and assignment
constexpr	output_alignment ()=default
	Defaulted.
constexpr	output_alignment (output_alignment const &)=default
	Defaulted.
constexpr	output_alignment (output_alignment &&)=default
	Defaulted.
constexpr output_alignment &	operator= (output_alignment const &)=default
	Defaulted.
constexpr output_alignment &	operator= (output_alignment &&)=default
	Defaulted.
	~output_alignment ()=default
	Defaulted.

Detailed Description

Configures the alignment result to output the alignment.

This option forces the alignment to compute and output the actual aligned sequences.

If this option is not set in the alignment configuration, accessing the alignment via the seqan3::alignment_result object is forbidden and will lead to a compile time error.

Example

// SPDX-FileCopyrightText: 2006-2024 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2024 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: CC0-1.0
 
#include <seqan3/alignment/configuration/align_config_output.hpp>
 
int main()
{
    // Compute only the alignment.
    seqan3::configuration cfg = seqan3::align_cfg::output_alignment{};
}

See also

seqan3::align_cfg::output_score

seqan3::align_cfg::output_end_position

seqan3::align_cfg::output_begin_position

seqan3::align_cfg::output_sequence1_id

seqan3::align_cfg::output_sequence2_id

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The documentation for this class was generated from the following file:

• align_config_output.hpp