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appendValue (RankSupportBitString)
bwtAt
childAt
childrenAreLeaves
countChildren
countOccurrences (RankDictionary)
countOccurrences
countOccurrencesMultiple
countSequences
createBWTable
createChildtab
createCountArray
createLcpTable
createQGramIndex
createQGramIndexDirOnly
createQGramIndexSAOnly
createSuffixArray
createWotdIndex
dirAt
emptyParentEdge
findRepeats
getFibre (CompressedSA)
getFibre (FMIndex)
getFibre (LfTable)
getFibre (PrefixSumTable)
getFibre (RankDictionary)
getFibre (RankSupportBitString)
getFibre (RightArrayBinaryTree)
getFibre (SentinelRankDictionary)
getFibre
getFrequency
getKmerSimilarityMatrix
getOccurrence
getOccurrences
getOccurrencesBwt
getStepSize
goDown
goRight
goRoot
goUp
hash
hash2
hash2Next
hash2Upper
hashNext
hashUpper
indexBucketMap
indexBwt
indexChildtab
indexCounts
indexCountsDir
indexCreate
indexDir
indexLcp
indexLcpe
indexRawSA
indexRawText
indexRequire
indexSA
indexShape
indexSupplied
indexText
isLeaf
isLeftMaximal
isPartiallyLeftExtensible
isRightTerminal
isRoot
isUnique
lca
lcp
lcpAt
lcpeAt
lfMapping (LfTable)
nodeDepth
nodeHullPredicate
nodePredicate
nodeUp
orderOccurrences
parentEdgeFirstChar
parentEdgeLabel
parentEdgeLength
parentRepLength
range
rawsaAt
rawtextAt
repLength
representative
resizeVertexMap
saAt
setStepSize
shapeToString
stringToShape
textAt
unhash
weight
Input/Output
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Local Match Store
Map
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Motif Search
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Searching
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Sequences
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internal
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