align_config_band.hpp

Go to the documentation of this file.

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <limits>
 
#include <seqan3/alignment/configuration/detail.hpp>
#include <seqan3/alignment/exception.hpp>
#include <seqan3/core/configuration/pipeable_config_element.hpp>
#include <seqan3/core/detail/empty_type.hpp>
#include <seqan3/core/detail/strong_type.hpp>
 
namespace seqan3::align_cfg
{
 
struct lower_diagonal : public seqan3::detail::strong_type<int32_t, lower_diagonal>
{
    using base_t = seqan3::detail::strong_type<int32_t, lower_diagonal>;
    // Import the base class constructors
    using base_t::base_t;
};
struct lower_diagonal : public seqan3::detail::strong_type<int32_t, lower_diagonal> {…};
 
struct upper_diagonal : public seqan3::detail::strong_type<int32_t, upper_diagonal>
{
    using base_t = seqan3::detail::strong_type<int32_t, upper_diagonal>;
    // Import the base class constructors
    using base_t::base_t;
};
struct upper_diagonal : public seqan3::detail::strong_type<int32_t, upper_diagonal> {…};
 
class band_fixed_size : private pipeable_config_element
{
public:
    int32_t lower_diagonal{std::numeric_limits<int32_t>::lowest()};
    int32_t upper_diagonal{std::numeric_limits<int32_t>::max()};
 
    constexpr band_fixed_size() = default;                                    
    constexpr band_fixed_size(band_fixed_size const &) = default;             
    constexpr band_fixed_size(band_fixed_size &&) = default;                  
    constexpr band_fixed_size & operator=(band_fixed_size const &) = default; 
    constexpr band_fixed_size & operator=(band_fixed_size &&) = default;      
    ~band_fixed_size() = default;                                             
 
    constexpr band_fixed_size(seqan3::align_cfg::lower_diagonal const lower_diagonal,
                              seqan3::align_cfg::upper_diagonal const upper_diagonal) :
        lower_diagonal{lower_diagonal.get()},
        upper_diagonal{upper_diagonal.get()}
    {}
    constexpr band_fixed_size(seqan3::align_cfg::lower_diagonal const lower_diagonal, {…}
 
    static constexpr seqan3::detail::align_config_id id{seqan3::detail::align_config_id::band};
};
class band_fixed_size : private pipeable_config_element {…};
 
} // namespace seqan3::align_cfg
namespace seqan3::align_cfg {…}