Here is a list of all documented functions with links to the class documentation for each member:

- i -

• id() : config_element, seqan3::sam_record< field_types, field_ids >, seqan3::sequence_record< field_types, field_ids >, seqan3::structure_record< field_types, field_ids >
• id_alphabet() : sequence_file_input_traits, structure_file_input_traits
• id_container() : sam_file_input_traits, sequence_file_input_traits, structure_file_input_traits
• id_exists() : seqan3::argument_parser
• identify_and_retrieve_option_value() : seqan3::detail::format_parse
• ignore_output_iterator() : seqan3::detail::ignore_output_iterator
• impl() : seqan3::detail::adaptor_for_view_without_args< view_type >, seqan3::detail::adaptor_from_functor< functor_type, stored_args_ts >, seqan3::detail::combined_adaptor< left_adaptor_t, right_adaptor_t >, seqan3::detail::pseudo_random_access_fn, seqan3::detail::type_reduce_fn, seqan3::views::deep< underlying_adaptor_t >
• in_bold() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• in_file_iterator() : seqan3::detail::in_file_iterator< file_type >
• increase_bin_number_to() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• index_cursor() : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• index_of() : seqan3::fields< fs >
• inherited_iterator_base() : seqan3::detail::inherited_iterator_base< derived_t, base_t >
• init() : seqan3::argument_parser
• init_by_filename() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• init_by_format() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• init_column_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_origin_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_row_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_standard_options() : seqan3::argument_parser
• initialise_alignment_state() : seqan3::detail::affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >, seqan3::detail::simd_affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >
• initialise_band_first_cell() : seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >
• initialise_column() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >, seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
• initialise_debug_matrices() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• initialise_find_optimum_policy() : seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t >
• initialise_first_alignment_column() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• initialise_first_column_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_first_row_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_from_scalar_scoring_scheme() : seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• initialise_header_information() : seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
• initialise_matrix_iterator() : seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t >
• initialise_origin_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_tracker() : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• input_directory_validator() : seqan3::input_directory_validator
• input_file_validator() : seqan3::input_file_validator< file_t >
• insert() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• insert_gap() : seqan3::gap_decorator< inner_type >, writable_aligned_sequence
• int_type() : input_stream_over, output_stream_over
• interleaved_bloom_filter() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• internal_state() : seqan3::detail::execution_handler_parallel::internal_state
• invalid_alignment_configuration() : seqan3::invalid_alignment_configuration
• invalid_char_assignment() : seqan3::invalid_char_assignment
• invalid_coordinate() : seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >
• invoke_comparator() : seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >
• invoke_on_type_identities() : seqan3::detail::type_list_expander< type_list_t< args_t... > >
• invoke_to_type_list() : seqan3::detail::tuple_type_list< tuple_t >
• io_error() : seqan3::io_error
• iota_simd_view() : seqan3::detail::iota_simd_view< index_simd_t >
• is_alternative() : seqan3::alphabet_variant< alternative_types >
• is_buffer_empty() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• is_empty_id() : seqan3::detail::format_parse
• is_eof() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• is_last_active_cell_within_last_row() : seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >
• is_option_set() : seqan3::argument_parser
• is_pair_close() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_pair_open() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_unpaired() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_valid() : seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >
• iterator() : seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::trace_matrix_full< trace_t >::iterator
• iterator_type() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type