Here is a list of all documented class members with links to the class documentation for each member:

- i -

• ibf_ptr : seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
• ibf_t : seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
• id() : config_element, seqan3::align_cfg::band_fixed_size, seqan3::align_cfg::detail::result_type< alignment_result_t >, seqan3::align_cfg::gap_cost_affine, seqan3::align_cfg::method_global, seqan3::align_cfg::method_local, seqan3::align_cfg::min_score, seqan3::align_cfg::on_result< callback_t >, seqan3::align_cfg::output_alignment, seqan3::align_cfg::output_begin_position, seqan3::align_cfg::output_end_position, seqan3::align_cfg::output_score, seqan3::align_cfg::output_sequence1_id, seqan3::align_cfg::output_sequence2_id, seqan3::align_cfg::score_type< score_t >, seqan3::align_cfg::scoring_scheme< scoring_scheme_t >, seqan3::align_cfg::vectorised, seqan3::detail::debug_mode< wrapped_config_id_t >, seqan3::detail::parallel_mode< wrapped_config_id_t >, seqan3::sam_file_program_info_t, seqan3::sam_record< field_types, field_ids >, seqan3::search_cfg::detail::result_type< search_result_t >, seqan3::search_cfg::hit, seqan3::search_cfg::hit_all, seqan3::search_cfg::hit_all_best, seqan3::search_cfg::hit_single_best, seqan3::search_cfg::hit_strata, seqan3::search_cfg::max_error_deletion, seqan3::search_cfg::max_error_insertion, seqan3::search_cfg::max_error_substitution, seqan3::search_cfg::max_error_total, seqan3::search_cfg::on_result< callback_t >, seqan3::search_cfg::output_index_cursor, seqan3::search_cfg::output_query_id, seqan3::search_cfg::output_reference_begin_position, seqan3::search_cfg::output_reference_id, seqan3::sequence_record< field_types, field_ids >, seqan3::structure_record< field_types, field_ids >
• id_alphabet : seqan3::sequence_file_input_default_traits_dna, seqan3::structure_file_input_default_traits_rna, sequence_file_input_traits, structure_file_input_traits
• id_container() : sam_file_input_traits, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >, seqan3::sequence_file_input_default_traits_dna, seqan3::structure_file_input_default_traits_rna, sequence_file_input_traits, structure_file_input_traits
• id_exists() : seqan3::argument_parser
• id_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• identify_and_retrieve_option_value() : seqan3::detail::format_parse
• ignore_output_iterator() : seqan3::detail::ignore_output_iterator
• impl() : seqan3::detail::adaptor_for_view_without_args< view_type >, seqan3::detail::adaptor_from_functor< functor_type, stored_args_ts >, seqan3::detail::combined_adaptor< left_adaptor_t, right_adaptor_t >, seqan3::detail::pseudo_random_access_fn, seqan3::detail::type_reduce_fn, seqan3::views::deep< underlying_adaptor_t >
• in_bold() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• in_file_iterator() : seqan3::detail::in_file_iterator< file_type >
• increase_bin_number_to() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• index : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >
• index_alphabet_type : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• index_cursor() : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• index_cursor_t : seqan3::detail::search_configurator::select_search_result< search_configuration_t, index_t, query_index_t >
• index_cursor_type : seqan3::detail::search_configurator::select_search_result< search_configuration_t, index_t, query_index_t >
• index_of() : seqan3::fields< fs >
• index_offset : seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• index_ptr : seqan3::detail::search_scheme_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::unidirectional_search_algorithm< configuration_t, index_t, policies_t >
• index_scalar_type : seqan3::detail::iota_simd_view< index_simd_t >, seqan3::detail::iota_simd_view_fn< index_simd_t >
• index_size_type : seqan3::detail::search_configurator::select_search_result< search_configuration_t, index_t, query_index_t >
• index_t : seqan3::detail::alignment_optimum< score_t >
• index_type : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• inf : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >::format_type, seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >
• info : seqan3::argument_parser
• inherited_iterator_base() : seqan3::detail::inherited_iterator_base< derived_t, base_t >
• init() : seqan3::argument_parser
• init_by_filename() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• init_by_format() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• init_column_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_origin_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_row_cell() : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >
• init_standard_options() : seqan3::argument_parser
• initialise_alignment_state() : seqan3::detail::affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >, seqan3::detail::simd_affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >
• initialise_band_first_cell() : seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >
• initialise_column() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >, seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
• initialise_debug_matrices() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• initialise_find_optimum_policy() : seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t >
• initialise_first_alignment_column() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• initialise_first_column_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_first_row_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_from_scalar_scoring_scheme() : seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• initialise_header_information() : seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >
• initialise_matrix_iterator() : seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t >
• initialise_origin_cell() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• initialise_tracker() : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• inner_range_type : seqan3::detail::view_to_simd< urng_t, simd_t >
• input_directory_validator() : seqan3::input_directory_validator
• input_file_validator() : seqan3::input_file_validator< file_t >
• insert() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• insert_gap() : seqan3::gap_decorator< inner_type >, writable_aligned_sequence
• inserted_range : seqan3::detail::view_interleave< urng_t, inserted_rng_t >
• insertion : seqan3::detail::policy_max_error, seqan3::detail::search_param
• instantiate_if_t : seqan3::detail::instantiate_if< t, condition >
• instantiate_if_v : seqan3::detail::instantiate_if< t, condition >
• instantiate_t : seqan3::detail::instantiate< t >
• int_type() : input_stream_over, output_stream_over
• interaction_tab : seqan3::wuss< SIZE >
• interleaved_bloom_filter() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• internal : seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• internal_proxy : seqan3::bitpacked_sequence< alphabet_type >::reference_proxy_type
• internal_state() : seqan3::detail::execution_handler_parallel::internal_state
• invalid_alignment_configuration() : seqan3::invalid_alignment_configuration
• invalid_char_assignment() : seqan3::invalid_char_assignment
• invalid_coordinate() : seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >
• invoke : seqan3::detail::assignable_from< T >, seqan3::detail::constructible_from< T >, seqan3::detail::deferred_crtp_base< crtp_base, args_t >, seqan3::detail::deferred_crtp_base_vargs< crtp_base, args >, seqan3::detail::implicitly_convertible_from< T >, seqan3::detail::is_same_configuration_f< query_t >, seqan3::detail::weakly_equality_comparable_with_< T >, seqan3::detail::weakly_ordered_with_< T >
• invoke_comparator() : seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >
• invoke_on_type_identities() : seqan3::detail::type_list_expander< type_list_t< args_t... > >
• invoke_to_type_list() : seqan3::detail::tuple_type_list< tuple_t >
• io_error() : seqan3::io_error
• iota_simd_view() : seqan3::detail::iota_simd_view< index_simd_t >
• iota_view_t : seqan3::detail::coordinate_matrix< index_t >::iterator
• is_alphabet_comparable_with : seqan3::alphabet_proxy< derived_type, alphabet_type >
• is_alternative() : seqan3::alphabet_variant< alternative_types >
• is_always_equal : seqan3::aligned_allocator< value_t, alignment_v >
• is_at_gap : seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• is_banded : seqan3::detail::alignment_configuration_traits< configuration_t >
• is_binning_bitvector : seqan3::counting_vector< value_t >
• is_buffer_empty() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• is_class_template_declarable_with_v : seqan3::detail::is_class_template_declarable_with< query_t, args_t >
• is_compatible_with_value_type : seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
• is_component : seqan3::alphabet_tuple_base< derived_type, component_types >
• is_constexpr_default_constructible_v : seqan3::is_constexpr_default_constructible< t >
• is_debug : seqan3::detail::alignment_configuration_traits< configuration_t >
• is_dl : seqan3::detail::format_html
• is_empty_id() : seqan3::detail::format_parse
• is_eof() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• is_first_in_section : seqan3::detail::format_man
• is_global : seqan3::detail::alignment_configuration_traits< configuration_t >, seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• is_global_alignment : seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t >
• is_last_active_cell_within_last_row() : seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >
• is_local : seqan3::detail::alignment_configuration_traits< configuration_t >
• is_local_t : seqan3::detail::alignment_configurator::select_gap_policy< traits_t >
• is_noexcept : seqan3::small_vector< value_type_, capacity_ >
• is_one_way_execution : seqan3::detail::alignment_configuration_traits< configuration_t >
• is_option_set() : seqan3::argument_parser
• is_optional_score : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >
• is_p : seqan3::detail::format_html
• is_pair_close() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_pair_open() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_parallel : seqan3::detail::alignment_configuration_traits< configuration_t >
• is_semi_global : seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
• is_traceback_matrix : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >
• is_type_specialisation_of_v : seqan3::detail::is_type_specialisation_of< source_t, target_template >
• is_unique_component : seqan3::alphabet_tuple_base< derived_type, component_types >
• is_unpaired() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• is_valid() : seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >
• is_vectorised : seqan3::detail::alignment_configuration_traits< configuration_t >
• it_t : seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >
• iter_value_t_is_compatible_with_value_type : seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
• iterator : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::pairwise_combine_view< underlying_range_type >, seqan3::detail::repeat_view< value_t >, seqan3::detail::single_pass_input_view< urng_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::view_interleave< urng_t, inserted_rng_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >, seqan3::detail::view_translate< urng_t >, seqan3::detail::view_translate_join< urng_t >, seqan3::detail::view_translate_single< urng_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::gap_decorator< inner_type >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• iterator_category : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_path_iterator, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::maybe_iterator_category< underlying_iterator_t >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• iterator_concept : seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type
• iterator_type() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::iota_simd_view< index_simd_t >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type