Here is a list of all documented class members with links to the class documentation for each member:

- p -

• padding_match_score() : seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• padding_offsets : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• padding_simd_vector : seqan3::detail::view_to_simd< urng_t, simd_t >
• padding_symbol : seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
• padding_t : seqan3::detail::to_simd_fn< simd_t >
• padding_value : seqan3::detail::view_to_simd< urng_t, simd_t >
• pairwise_alignment_algorithm() : seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
• pairwise_alignment_algorithm_banded() : seqan3::detail::pairwise_alignment_algorithm_banded< alignment_configuration_t, policies_t >
• pairwise_combine_view() : seqan3::detail::pairwise_combine_view< underlying_range_type >
• parallel_mode() : seqan3::detail::parallel_mode< wrapped_config_id_t >
• parent : seqan3::alphabet_tuple_base< derived_type, component_types >::component_proxy< alphabet_type, index >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_path_iterator
• parent_lb : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• parent_rb : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• parent_t : seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >
• parse() : seqan3::argument_parser, seqan3::detail::format_copyright, seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_parse, seqan3::detail::format_short_help, seqan3::detail::format_version
• parse_binary_cigar() : seqan3::format_bam
• parse_error() : seqan3::parse_error
• parse_option_value() : seqan3::detail::format_parse
• parse_was_called : seqan3::argument_parser
• parser_set_up_calls : seqan3::detail::format_help_base< derived_type >
• partial_sum_sizes : seqan3::alphabet_variant< alternative_types >
• pass_args_to_impl() : seqan3::detail::adaptor_base< derived_type, stored_args_ts >
• path_label() : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• pattern : seqan3::regex_validator
• pause_processor() : seqan3::detail::spin_delay
• perform_search_by_hit_strategy() : seqan3::detail::search_scheme_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::unidirectional_search_algorithm< configuration_t, index_t, policies_t >
• phred42() : seqan3::phred42
• phred63() : seqan3::phred63
• phred68solexa() : seqan3::phred68solexa
• phred94() : seqan3::phred94
• phred_base() : seqan3::phred_base< derived_type, size >
• phred_to_rank : seqan3::phred_base< derived_type, size >
• phred_type : seqan3::alphabet_proxy< derived_type, alphabet_type >, seqan3::phred_base< derived_type, size >, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
• physical_column_t : seqan3::detail::score_matrix_single_column< score_t >, seqan3::detail::trace_matrix_full< trace_t >
• pi : seqan3::detail::search< nbr_blocks >, seqan3::detail::search_dyn
• pivot_column : seqan3::detail::trace_iterator_banded< matrix_iter_t >
• pod_tuple() : seqan3::pod_tuple< types >, seqan3::pod_tuple< type0, types... >
• pointer : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::aligned_allocator< value_t, alignment_v >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• policy_affine_gap_recursion() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >
• policy_affine_gap_recursion_banded() : seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >
• policy_affine_gap_with_trace_recursion() : seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• policy_affine_gap_with_trace_recursion_banded() : seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >
• policy_alignment_matrix() : seqan3::detail::policy_alignment_matrix< traits_t, alignment_matrix_t >
• policy_alignment_result_builder() : seqan3::detail::policy_alignment_result_builder< alignment_configuration_t >
• policy_max_error() : seqan3::detail::policy_max_error
• policy_optimum_tracker() : seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >
• policy_optimum_tracker_simd() : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• policy_scoring_scheme() : seqan3::detail::policy_scoring_scheme< alignment_configuration_t, scoring_scheme_t >
• policy_search_result_builder() : seqan3::detail::policy_search_result_builder< search_configuration_t >
• pool : seqan3::detail::alignment_score_matrix_one_column_base< score_t >
• pool_type : seqan3::detail::alignment_score_matrix_one_column_base< score_t >, seqan3::detail::alignment_trace_matrix_base< trace_t >
• pop_back() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >
• pos : seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::format_bam::alignment_record_core, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• pos_type() : input_stream_over, output_stream_over
• position_buffer : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• position_type : seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >
• positional_option_calls : seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_parse
• positional_option_count : seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_parse
• precision : seqan3::structure_file_output_options
• prep_id_for_help() : seqan3::detail::format_base
• prepend_dash() : seqan3::detail::format_parse
• prev_last_active_cell() : seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >
• prev_was_paragraph : seqan3::detail::format_help
• previous : seqan3::sam_file_program_info_t
• primary_stream : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• print_footer() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• print_header() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• print_impl() : seqan3::alignment_matrix_printer< alignment_matrix_t >, seqan3::trace_directions_printer< detail::trace_directions >
• print_legal() : seqan3::detail::format_help_base< derived_type >
• print_line() : seqan3::detail::format_help, seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_html, seqan3::detail::format_man
• print_list_item() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• print_section() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• print_subsection() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
• print_synopsis() : seqan3::detail::format_help_base< derived_type >
• print_text() : seqan3::detail::format_help
• print_version() : seqan3::detail::format_help_base< derived_type >
• printer_for_t : seqan3::printer_order< printer_templates_t >
• producer : seqan3::detail::async_input_buffer_view< urng_t >::state
• program_info_t : seqan3::sam_file_header< ref_ids_type >
• program_infos : seqan3::sam_file_header< ref_ids_type >
• proxy_reference() : seqan3::detail::proxy_reference< value_t >
• pseudoknot_id() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
• ptr : seqan3::detail::proxy_reference< value_t >
• push_back() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >