Here is a list of all documented functions with links to the class documentation for each member:
- p -
- padding_match_score() : seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >
- pairwise_alignment_algorithm() : seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >
- pairwise_alignment_algorithm_banded() : seqan3::detail::pairwise_alignment_algorithm_banded< alignment_configuration_t, policies_t >
- pairwise_combine_view() : seqan3::detail::pairwise_combine_view< underlying_range_type >
- parallel_mode() : seqan3::detail::parallel_mode< wrapped_config_id_t >
- parse() : seqan3::argument_parser, seqan3::detail::format_copyright, seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_parse, seqan3::detail::format_short_help, seqan3::detail::format_version
- parse_binary_cigar() : seqan3::format_bam
- parse_error() : seqan3::parse_error
- parse_option_value() : seqan3::detail::format_parse
- pass_args_to_impl() : seqan3::detail::adaptor_base< derived_type, stored_args_ts >
- path_label() : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
- pause_processor() : seqan3::detail::spin_delay
- perform_search_by_hit_strategy() : seqan3::detail::search_scheme_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::unidirectional_search_algorithm< configuration_t, index_t, policies_t >
- phred42() : seqan3::phred42
- phred63() : seqan3::phred63
- phred68solexa() : seqan3::phred68solexa
- phred94() : seqan3::phred94
- phred_base() : seqan3::phred_base< derived_type, size >
- pod_tuple() : seqan3::pod_tuple< types >, seqan3::pod_tuple< type0, types... >
- policy_affine_gap_recursion() : seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >
- policy_affine_gap_recursion_banded() : seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >
- policy_affine_gap_with_trace_recursion() : seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
- policy_affine_gap_with_trace_recursion_banded() : seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >
- policy_alignment_matrix() : seqan3::detail::policy_alignment_matrix< traits_t, alignment_matrix_t >
- policy_alignment_result_builder() : seqan3::detail::policy_alignment_result_builder< alignment_configuration_t >
- policy_max_error() : seqan3::detail::policy_max_error
- policy_optimum_tracker() : seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >
- policy_optimum_tracker_simd() : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
- policy_scoring_scheme() : seqan3::detail::policy_scoring_scheme< alignment_configuration_t, scoring_scheme_t >
- policy_search_result_builder() : seqan3::detail::policy_search_result_builder< search_configuration_t >
- pop_back() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >
- pos_type() : input_stream_over, output_stream_over
- prep_id_for_help() : seqan3::detail::format_base
- prepend_dash() : seqan3::detail::format_parse
- prev_last_active_cell() : seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >
- print_footer() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
- print_header() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
- print_impl() : seqan3::alignment_matrix_printer< alignment_matrix_t >, seqan3::trace_directions_printer< detail::trace_directions >
- print_legal() : seqan3::detail::format_help_base< derived_type >
- print_line() : seqan3::detail::format_help, seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_html, seqan3::detail::format_man
- print_list_item() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
- print_section() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
- print_subsection() : seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man
- print_synopsis() : seqan3::detail::format_help_base< derived_type >
- print_text() : seqan3::detail::format_help
- print_version() : seqan3::detail::format_help_base< derived_type >
- proxy_reference() : seqan3::detail::proxy_reference< value_t >
- pseudoknot_id() : seqan3::dot_bracket3, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::wuss< SIZE >
- push_back() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >