SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- a -
add_enum_bitwise_operators :
seqan3
add_enum_bitwise_operators< fmtflags2 > :
seqan3
add_enum_bitwise_operators< sam_flag > :
seqan3
add_enum_bitwise_operators< translation_frames > :
seqan3
advanceable_alignment_coordinate_state :
seqan3::detail
advanced :
seqan3
align_config_id :
seqan3::detail
align_pairwise() :
seqan3
alignment_from_cigar() :
seqan3
alignment_result_value_type() :
seqan3::detail
all_elements_model_totally_ordered() :
seqan3::detail
all_model_aligned_seq :
seqan3::detail
all_model_aligned_seq< type_list< elems... > > :
seqan3::detail
all_of() :
seqan3::detail
alphabet_char_t :
seqan3
alphabet_phred_t :
seqan3
alphabet_rank_t :
seqan3
alphabet_size :
seqan3
aminoacid_similarity_matrix :
seqan3
assign_char_strictly_to :
seqan3
assign_char_to :
seqan3
assign_phred_to :
seqan3
assign_rank_to :
seqan3
async_input_buffer :
seqan3::views
at :
seqan3::list_traits
,
seqan3::pack_traits
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