Here is a list of all documented class members with links to the class documentation for each member:

- f -

• failed() : seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >
• fast_istreambuf_iterator() : seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >
• fast_load : seqan3::detail::view_to_simd< urng_t, simd_t >
• fast_ostreambuf_iterator() : seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >
• fasta_blank_before_id : seqan3::sequence_file_output_options
• fasta_ignore_blanks_before_id : seqan3::sequence_file_input_options< sequence_legal_alphabet >
• fasta_legacy_id_marker : seqan3::sequence_file_output_options
• fasta_letters_per_line : seqan3::sequence_file_output_options
• fastq_double_id : seqan3::sequence_file_output_options
• field_constant : seqan3::record< field_types, field_ids >, seqan3::sam_record< field_types, field_ids >, seqan3::sequence_record< field_types, field_ids >, seqan3::structure_record< field_types, field_ids >
• field_ids : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• field_types : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• file_extensions : seqan3::detail::bgzf_compression, seqan3::detail::bz2_compression, seqan3::detail::gz_compression, seqan3::detail::zstd_compression, seqan3::format_bam, seqan3::format_embl, seqan3::format_fasta, seqan3::format_fastq, seqan3::format_genbank, seqan3::format_sam, seqan3::format_vienna, seqan3::sam_file_input_format< t >, seqan3::sam_file_output_format< t >, seqan3::sequence_file_input_format< t >, seqan3::sequence_file_output_format< t >, seqan3::structure_file_input_format< t >, seqan3::structure_file_output_format< t >
• file_open_error() : seqan3::file_open_error
• file_position() : seqan3::detail::in_file_iterator< file_type >
• file_validator_base() : seqan3::file_validator_base, seqan3::input_directory_validator, seqan3::input_file_validator< file_t >, seqan3::output_directory_validator, seqan3::output_file_validator< file_t >
• fill_aligned_sequence() : seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >
• fill_buffer() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• fill_status : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• final_chunk : seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type
• final_chunk_pos : seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type
• final_chunk_size : seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type
• finalise_alignment() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• finalise_last_cell_in_column() : seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >
• find_index() : seqan3::printer_order< printer_templates_t >
• find_next_non_empty_bucket() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• find_optimum_policy() : seqan3::detail::find_optimum_policy< alignment_algorithm_t >
• find_option_id() : seqan3::detail::format_parse
• first : seqan3::detail::advanceable_alignment_coordinate< state >
• first_aligned_t : seqan3::detail::make_pairwise_alignment_type< first_sequence_t, second_sequence_t >
• first_column_is_free : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >, seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• first_it : seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >
• first_record_was_read : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• first_row_is_free : seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >, seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >
• first_seq_t : seqan3::detail::alignment_contract< range_type, alignment_config_type >
• first_sequence() : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >
• first_sequence_slice_positions : seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >::result_type
• first_valid_char_table : seqan3::alphabet_variant< alternative_types >
• flag : seqan3::detail::reader_writer_manager, seqan3::format_bam::alignment_record_core, seqan3::sam_record< field_types, field_ids >
• flag_calls : seqan3::detail::format_parse
• flag_is_set() : seqan3::detail::format_parse
• flag_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• flags() : seqan3::debug_stream_type< char_t >
• flags2() : seqan3::debug_stream_type< char_t >
• flgs2 : seqan3::debug_stream_type< char_t >
• flip() : seqan3::dynamic_bitset< bit_capacity >
• fm_index() : seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• fm_index_cursor() : seqan3::fm_index_cursor< index_t >
• fm_index_type : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• fmtflags : seqan3::debug_stream_type< char_t >
• for_each_set_bin() : seqan3::counting_vector< value_t >
• format : seqan3::argument_parser, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• format_bam() : seqan3::format_bam
• format_embl() : seqan3::format_embl
• format_error() : seqan3::format_error
• format_fasta() : seqan3::format_fasta
• format_fastq() : seqan3::format_fastq
• format_genbank() : seqan3::format_genbank
• format_help() : seqan3::detail::format_help
• format_help_base() : seqan3::detail::format_help_base< derived_type >
• format_html() : seqan3::detail::format_html
• format_man() : seqan3::detail::format_man
• format_parse() : seqan3::detail::format_parse
• format_sam() : seqan3::format_sam
• format_sam_base() : seqan3::detail::format_sam_base
• format_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• format_version : seqan3::detail::format_sam_base, seqan3::sam_file_header< ref_ids_type >
• format_vienna() : seqan3::format_vienna
• free_end_gaps_sequence1_leading : seqan3::align_cfg::method_global
• free_end_gaps_sequence1_trailing : seqan3::align_cfg::method_global
• free_end_gaps_sequence2_leading : seqan3::align_cfg::method_global
• free_end_gaps_sequence2_trailing : seqan3::align_cfg::method_global
• from_index() : seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >
• front() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• fst_rng : seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >
• fun : seqan3::detail::adaptor_from_functor< functor_type, stored_args_ts >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_sentinel< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >
• fwd_cursor() : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >
• fwd_cursor_last_used : seqan3::bi_fm_index_cursor< index_t >
• fwd_cursor_type : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• fwd_fm : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• fwd_lb : seqan3::bi_fm_index_cursor< index_t >
• fwd_rb : seqan3::bi_fm_index_cursor< index_t >