Here is a list of all documented class members with links to the class documentation for each member:

- r -

• r_left : seqan3::detail::alignment_score_matrix_proxy< score_type >, seqan3::detail::alignment_trace_matrix_proxy< coordinate_type, trace_type >
• random_access_iterator_base() : seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >
• range_base_t : seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >
• range_ptr : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator
• range_value_t_is_compatible_with_value_type : seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >
• rank : seqan3::alphabet_base< derived_type, size, char_t >
• rank_by_index_() : seqan3::alphabet_variant< alternative_types >
• rank_by_type_() : seqan3::alphabet_variant< alternative_types >
• rank_complement() : seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::rna15, seqan3::rna4, seqan3::rna5
• rank_complement_table : seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5
• rank_sum_helper() : seqan3::alphabet_tuple_base< derived_type, component_types >
• rank_to_char() : seqan3::aa10li, seqan3::aa10murphy, seqan3::aa20, seqan3::aa27, seqan3::alphabet_variant< alternative_types >, seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::dot_bracket3, seqan3::dssp9, seqan3::exposition_only::cigar_operation, seqan3::gap, seqan3::masked< sequence_alphabet_t >, seqan3::phred_base< derived_type, size >, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::rna15, seqan3::rna4, seqan3::rna5, seqan3::wuss< SIZE >
• rank_to_char_table : seqan3::aa10li, seqan3::aa10murphy, seqan3::aa20, seqan3::aa27, seqan3::alphabet_variant< alternative_types >, seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::dot_bracket3, seqan3::dssp9, seqan3::exposition_only::cigar_operation, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::rna15, seqan3::rna4, seqan3::rna5, seqan3::wuss< SIZE >
• rank_to_phred : seqan3::phred_base< derived_type, size >, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >
• rank_type : seqan3::alphabet_base< derived_type, size, char_t >, seqan3::wuss< SIZE >
• raw_data() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::bloom_filter< data_layout_mode_ >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::interleaved_bloom_filter< data_layout_mode_ >
• raw_record : seqan3::format_sam
• rb : seqan3::detail::fm_index_cursor_node< index_t >
• react_container : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• react_type : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• read_alignment_record() : seqan3::detail::sam_file_input_format_exposer< format_type >, seqan3::format_bam, seqan3::format_sam, seqan3::sam_file_input_format< t >
• read_arithmetic_field() : seqan3::detail::format_sam_base
• read_float_byte_field() : seqan3::format_bam
• read_forward_range_field() : seqan3::detail::format_sam_base
• read_groups : seqan3::sam_file_header< ref_ids_type >
• read_header() : seqan3::detail::format_sam_base
• read_id() : seqan3::format_fasta
• read_integral_byte_field() : seqan3::format_bam
• read_next_record() : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• read_sam_byte_vector() : seqan3::format_sam
• read_sam_dict() : seqan3::format_bam, seqan3::format_sam
• read_sam_dict_vector() : seqan3::format_bam, seqan3::format_sam
• read_seq() : seqan3::format_fasta
• read_sequence_record() : seqan3::detail::sequence_file_input_format_exposer< format_type >, seqan3::format_embl, seqan3::format_fasta, seqan3::format_fastq, seqan3::format_genbank, seqan3::format_sam, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >::selected_sequence_format< format_t >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >::sequence_format_base, seqan3::sequence_file_input_format< t >
• read_structure() : seqan3::format_vienna
• read_structure_record() : seqan3::detail::structure_file_input_format_exposer< format_type >, seqan3::format_vienna, seqan3::structure_file_input_format< t >
• reader_arrive() : seqan3::detail::reader_writer_manager
• reader_arrive_and_wait() : seqan3::detail::reader_writer_manager
• reader_latch : seqan3::detail::reader_writer_manager
• reader_writer_manager() : seqan3::detail::reader_writer_manager
• rebind : seqan3::simd::simd_traits< simd_t >, seqan3::simd::simd_traits< builtin_simd_t >
• record() : seqan3::record< field_types, field_ids >
• record_buffer : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• record_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• recursive_adaptor() : seqan3::views::deep< underlying_adaptor_t >
• recursive_required_types_t : seqan3::detail::recursive_required_types< t >
• ref : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type
• ref_dict : seqan3::sam_file_header< ref_ids_type >
• ref_id_info : seqan3::sam_file_header< ref_ids_type >
• ref_id_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• ref_ids() : sam_file_input_traits, seqan3::sam_file_header< ref_ids_type >, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >
• ref_info_present_in_header : seqan3::detail::format_sam_base
• ref_offset_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• ref_sequence_sliced_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• ref_sequence_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• ref_sequence_unsliced_type : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• ref_sequences() : sam_file_input_traits, seqan3::sam_file_input_default_traits< ref_sequences_t, ref_ids_t >
• reference : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >, seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::matrix< matrix_t >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::repeat_view< value_t >, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_interleave< urng_t, inserted_rng_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::detail::view_translate< urng_t >, seqan3::detail::view_translate_join< urng_t >, seqan3::detail::view_translate_single< urng_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >, seqan3::gap_decorator< inner_type >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• reference_begin_position() : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• reference_begin_position_ : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• reference_begin_position_t : seqan3::detail::search_configurator::select_search_result< search_configuration_t, index_t, query_index_t >
• reference_id() : seqan3::sam_record< field_types, field_ids >, seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• reference_id_ : seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >
• reference_id_t : seqan3::detail::search_configurator::select_search_result< search_configuration_t, index_t, query_index_t >
• reference_ids : seqan3::sam_file_header< ref_ids_type >
• reference_position() : seqan3::sam_record< field_types, field_ids >
• reference_proxy_type() : seqan3::bitpacked_sequence< alphabet_type >::reference_proxy_type, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• reference_sequence() : seqan3::sam_record< field_types, field_ids >
• reference_sequences_ptr : seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• refID : seqan3::format_bam::alignment_record_core
• reg2bin() : seqan3::format_bam
• regex_validator() : seqan3::regex_validator
• register_reader() : seqan3::detail::reader_writer_manager
• register_writer() : seqan3::detail::reader_writer_manager
• remove() : seqan3::configuration< configs_t >, seqan3::detail::safe_filesystem_entry
• remove_all() : seqan3::detail::safe_filesystem_entry
• remove_at() : seqan3::configuration< configs_t >
• remove_no_throw() : seqan3::detail::safe_filesystem_entry
• remove_rvalue_reference_t : seqan3::remove_rvalue_reference< t >
• repeat_view() : seqan3::detail::repeat_view< value_t >
• required_option_missing() : seqan3::required_option_missing
• required_types_t : seqan3::detail::required_types< t >
• requires_trace_information : seqan3::detail::alignment_configuration_traits< configuration_t >
• reserve() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• reset() : seqan3::bloom_filter< data_layout_mode_ >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type, seqan3::dynamic_bitset< bit_capacity >
• reset_buffer() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• reset_optimum() : seqan3::detail::alignment_algorithm_state< score_type >, seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >, seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• resize() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >, seqan3::detail::coordinate_matrix< index_t >, seqan3::detail::score_matrix_single_column< score_t >, seqan3::detail::trace_matrix_full< trace_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >
• resource : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• resource_difference_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• resource_it : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• resource_iterator_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• resource_position() : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• resource_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• result_buffer : seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
• result_type() : seqan3::align_cfg::detail::result_type< alignment_result_t >, seqan3::detail::policy_alignment_result_builder< alignment_configuration_t >, seqan3::function_traits< std::function< return_t(args_t...)> >, seqan3::search_cfg::detail::result_type< search_result_t >
• result_value_type : seqan3::detail::default_edit_distance_trait_type< database_t, query_t, align_config_t, is_semi_global_t, word_t >
• rev_fm : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• rev_fm_index_type : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• rev_lb : seqan3::bi_fm_index_cursor< index_t >
• rev_rb : seqan3::bi_fm_index_cursor< index_t >
• rev_sdsl_index_type : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• reverse_fm_index() : seqan3::detail::reverse_fm_index< alphabet_t, text_layout_mode, sdsl_index_type >
• rightColumnTab : seqan3::detail::format_help::console_layout_struct
• rightColumnWidth : seqan3::detail::format_help::console_layout_struct
• rightPadding : seqan3::detail::format_help::console_layout_struct
• rna15 : seqan3::dna15, seqan3::rna15
• rna15_vector : seqan3::rna15
• rna4 : seqan3::dna4, seqan3::rna4
• rna4_vector : seqan3::rna4
• rna5 : seqan3::dna5, seqan3::rna5
• rna5_vector : seqan3::rna5
• roll_factor : seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >
• row : seqan3::detail::matrix_index< index_t >
• row_col_sep : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >::format_type
• row_count : seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::coordinate_matrix< index_t >, seqan3::detail::trace_matrix_full< trace_t >
• row_dim : seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >
• row_index : seqan3::detail::alignment_optimum< score_t >
• row_index_type() : seqan3::detail::row_index_type< index_type >
• row_sep : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >::format_type
• rows() : seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >, seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >, seqan3::detail::matrix< matrix_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >
• rows_size : seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >
• rupdate() : seqan3::gap_decorator< inner_type >