SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Welcome
Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- c -
call_server() :
seqan3::detail
ceil_log2() :
seqan3::detail
char_is_valid_for :
seqan3
char_strictly_to :
seqan3::views
char_to :
seqan3::views
chunk :
seqan3::views
cigar_from_alignment() :
seqan3
collection :
seqan3
common_pair :
seqan3
common_tuple :
seqan3
compatibility_table :
seqan3::detail
compatibility_table< align_config_id > :
seqan3::detail
compatibility_table< search_config_id > :
seqan3::detail
complement :
seqan3
,
seqan3::views
compressed :
seqan3
compression_formats :
seqan3::detail
compute_ss() :
seqan3::detail
concat :
seqan3::list_traits
consume() :
seqan3::detail
contains :
seqan3::list_traits
,
seqan3::pack_traits
convert :
seqan3::views
convert_through_char_representation :
seqan3::detail
count :
seqan3::pack_traits
count< query_t, type_list< pack_t... > > :
seqan3::list_traits
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3.4.0
3.3.0
3.2.0
3.1.0
3.0.3
3.0.2
3.0.1
3.0.0
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