Here is a list of all documented class members with links to the class documentation for each member:

- b -

• b : seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >::compute_state
• back() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::dynamic_bitset< bit_capacity >, seqan3::small_vector< value_type_, capacity_ >
• back_iterator : seqan3::detail::pairwise_combine_view< underlying_range_type >
• backward_search() : seqan3::fm_index_cursor< index_t >
• band_col_index : seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >
• band_fixed_size() : seqan3::align_cfg::band_fixed_size
• band_row_index : seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >
• band_size : seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >
• banded_gap_recursion_policy_type : seqan3::detail::alignment_configurator::select_gap_recursion_policy< config_t >
• base() : seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::random_access_iterator< range_type >
• base_algorithm_t : seqan3::detail::pairwise_alignment_algorithm_banded< alignment_configuration_t, policies_t >
• base_base_t : seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >
• base_iterator_type : seqan3::detail::basic_iterator< single_pass_input_view< view_type > >
• base_pair_probability_matrix() : seqan3::structure_record< field_types, field_ids >
• base_policy_t : seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >
• base_qualities() : seqan3::sam_record< field_types, field_ids >, seqan3::sequence_record< field_types, field_ids >
• base_t : seqan3::aa10li, seqan3::aa10murphy, seqan3::aa20, seqan3::aa27, seqan3::align_cfg::extension_score, seqan3::align_cfg::free_end_gaps_sequence1_leading, seqan3::align_cfg::free_end_gaps_sequence1_trailing, seqan3::align_cfg::free_end_gaps_sequence2_leading, seqan3::align_cfg::free_end_gaps_sequence2_trailing, seqan3::align_cfg::lower_diagonal, seqan3::align_cfg::open_score, seqan3::align_cfg::upper_diagonal, seqan3::alphabet_proxy< derived_type, alphabet_type >, seqan3::alphabet_tuple_base< derived_type, component_types >, seqan3::alphabet_tuple_base< derived_type, component_types >::component_proxy< alphabet_type, index >, seqan3::alphabet_variant< alternative_types >, seqan3::aminoacid_base< derived_type, size >, seqan3::aminoacid_scoring_scheme< score_type >, seqan3::bitpacked_sequence< alphabet_type >::reference_proxy_type, seqan3::cigar, seqan3::counting_vector< value_t >, seqan3::detail::adl_only::alphabet_size_cpo< alphabet_t >, seqan3::detail::adl_only::assign_char_to_cpo, seqan3::detail::adl_only::assign_phred_to_cpo, seqan3::detail::adl_only::assign_rank_to_cpo, seqan3::detail::adl_only::char_is_valid_for_cpo< alphabet_t >, seqan3::detail::adl_only::complement_cpo, seqan3::detail::adl_only::enable_aminoacid_cpo< alphabet_t >, seqan3::detail::adl_only::enumeration_names_cpo< option_t >, seqan3::detail::adl_only::is_pair_close_cpo, seqan3::detail::adl_only::is_pair_open_cpo, seqan3::detail::adl_only::is_unpaired_cpo, seqan3::detail::adl_only::max_pseudoknot_depth_cpo< alphabet_t >, seqan3::detail::adl_only::pseudoknot_id_cpo, seqan3::detail::adl_only::to_char_cpo, seqan3::detail::adl_only::to_phred_cpo, seqan3::detail::adl_only::to_rank_cpo, seqan3::detail::char_predicate_disjunction< condition_ts >, seqan3::detail::char_predicate_negator< condition_t >, seqan3::detail::constexpr_pseudo_bitset< N >, seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >, seqan3::detail::is_char_type< char_v >, seqan3::detail::is_in_interval_type< interval_first, interval_last >, seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >, seqan3::detail::pseudo_random_access_fn, seqan3::detail::reader_count, seqan3::detail::repeat_view< value_t >, seqan3::detail::repeat_view< value_t >::basic_iterator< parent_type >, seqan3::detail::stream_buffer_exposer< char_t, traits_t >, seqan3::detail::trace_iterator< matrix_iter_t >, seqan3::detail::trace_iterator_banded< matrix_iter_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::type_reduce_fn, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::writer_count, seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::dot_bracket3, seqan3::dssp9, seqan3::exposition_only::cigar_operation, seqan3::gap, seqan3::mask, seqan3::masked< sequence_alphabet_t >, seqan3::nucleotide_base< derived_type, size >, seqan3::nucleotide_scoring_scheme< score_type >, seqan3::phred42, seqan3::phred63, seqan3::phred68solexa, seqan3::phred94, seqan3::phred_base< derived_type, size >, seqan3::rna15, seqan3::rna4, seqan3::rna5, seqan3::sam_record< field_types, field_ids >, seqan3::semialphabet_any< size >, seqan3::sequence_record< field_types, field_ids >, seqan3::small_string< capacity_ >, seqan3::structure_record< field_types, field_ids >, seqan3::wuss< SIZE >
• base_type : seqan3::configuration< configs_t >, seqan3::detail::adaptor_for_view_without_args< view_type >, seqan3::detail::adaptor_from_functor< functor_type, stored_args_ts >, seqan3::detail::combined_adaptor< left_adaptor_t, right_adaptor_t >, seqan3::detail::format_help, seqan3::detail::format_html, seqan3::detail::format_man, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::record< field_types, field_ids >, seqan3::sam_tag_dictionary, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::views::deep< underlying_adaptor_t >
• basic_consume_iterator() : seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >
• basic_consume_sentinel : seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >
• basic_iterator : seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::repeat_view< value_t >::basic_iterator< parent_type >, seqan3::detail::single_pass_input_view< urng_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• basic_sentinel() : seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_sentinel< const_range >
• before_column_iterator_increment() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >
• begin() : seqan3::algorithm_result_generator_range< algorithm_executor_type >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::async_input_buffer_view< urng_t >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >, seqan3::detail::coordinate_matrix< index_t >, seqan3::detail::iota_simd_view< index_simd_t >, seqan3::detail::kmer_hash_view< urng_t >, seqan3::detail::minimiser_view< urng1_t, urng2_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >, seqan3::detail::repeat_view< value_t >, seqan3::detail::score_matrix_single_column< score_t >, seqan3::detail::single_pass_input_view< urng_t >, seqan3::detail::trace_matrix_full< trace_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator::column_proxy, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::view_enforce_random_access< urng_t >, seqan3::detail::view_interleave< urng_t, inserted_rng_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >, seqan3::detail::view_to_simd< urng_t, simd_t >, seqan3::detail::view_translate< urng_t >, seqan3::detail::view_translate_join< urng_t >, seqan3::detail::view_translate_single< urng_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::gap_decorator< inner_type >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >
• begin_index : seqan3::detail::iota_simd_view< index_simd_t >
• begin_it : seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >
• begin_position : seqan3::suffix_array_interval
• begin_positions : seqan3::detail::alignment_result_value_type< sequence1_id_t, sequence2_id_t, score_t, end_positions_t, begin_positions_t, alignment_t, score_debug_matrix_t, trace_debug_matrix_t >, seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >
• begin_positions_t : seqan3::alignment_result< alignment_result_value_t >
• best_score() : seqan3::detail::affine_cell_proxy< tuple_t >
• best_trace() : seqan3::detail::affine_cell_proxy< tuple_t >
• bi_fm_index() : seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >
• bi_fm_index_cursor() : seqan3::bi_fm_index_cursor< index_t >
• bidirectional_search() : seqan3::bi_fm_index_cursor< index_t >
• bidirectional_search_cycle() : seqan3::bi_fm_index_cursor< index_t >
• bin : seqan3::format_bam::alignment_record_core
• bin_count() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• bin_size() : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• bin_size_ : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• bin_words : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• binning_bitvector() : seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector
• bins : seqan3::interleaved_bloom_filter< data_layout_mode_ >
• bit_masks : seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
• bit_size() : seqan3::bloom_filter< data_layout_mode_ >, seqan3::interleaved_bloom_filter< data_layout_mode_ >
• bitpacked_sequence() : seqan3::bitpacked_sequence< alphabet_type >
• bits : seqan3::dynamic_bitset< bit_capacity >::bitfield
• bits_per_letter : seqan3::bitpacked_sequence< alphabet_type >
• block_size : seqan3::format_bam::alignment_record_core
• blocks() : seqan3::detail::search< nbr_blocks >, seqan3::detail::search_dyn
• blocks_length_type : seqan3::detail::search< nbr_blocks >, seqan3::detail::search_dyn
• bloom_filter() : seqan3::bloom_filter< data_layout_mode_ >
• blosum30 : seqan3::aminoacid_scoring_scheme< score_type >
• blosum45 : seqan3::aminoacid_scoring_scheme< score_type >
• blosum62 : seqan3::aminoacid_scoring_scheme< score_type >
• blosum80 : seqan3::aminoacid_scoring_scheme< score_type >
• bound_dummy : seqan3::gap_decorator< inner_type >
• bpp_container : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• bpp_item : seqan3::structure_file_input_default_traits_rna
• bpp_partner : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• bpp_prob : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• bpp_queue : seqan3::structure_file_input_default_traits_rna, structure_file_input_traits
• bpp_type : seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >
• bucket_it : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• bucket_iterator_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• bucket_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• buffer : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >, seqan3::detail::async_input_buffer_view< urng_t >::state
• buffer_end_it : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• buffer_it : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• buffer_iterator_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• buffer_ptr : seqan3::detail::async_input_buffer_view< urng_t >::iterator
• buffer_size : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• buffer_type : seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >
• bulk_contains() : seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type
• bulk_count() : seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >
• bulk_execute() : seqan3::detail::execution_handler_parallel, seqan3::detail::execution_handler_sequential