SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Welcome
Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- i -
ignore_t :
seqan3::detail
interleave :
seqan3::views
invoke_deferred_crtp_base :
seqan3::detail
iota() :
seqan3::simd
iota_impl() :
seqan3::detail
iota_simd :
seqan3::views
is_alnum :
seqan3
is_alpha :
seqan3
is_blank :
seqan3
is_builtin_simd_v :
seqan3::detail
is_char :
seqan3
is_char_adaptation_v :
seqan3::detail
is_cntrl :
seqan3
is_config_element_combineable_v :
seqan3
is_digit :
seqan3
is_eof :
seqan3
is_gapped_alphabet :
seqan3::detail
is_gapped_alphabet< gapped< t > > :
seqan3::detail
is_graph :
seqan3
is_in_interval :
seqan3
is_lower :
seqan3
is_native_builtin_simd_v :
seqan3::detail
is_pair_close :
seqan3
is_pair_open :
seqan3
is_print :
seqan3
is_punct :
seqan3
is_space :
seqan3
is_terminal() :
seqan3::detail
is_type_list_of_sam_file_input_formats_v :
seqan3::detail
is_type_list_of_sam_file_input_formats_v< type_list< ts... > > :
seqan3::detail
is_type_list_of_sam_file_output_formats_v :
seqan3::detail
is_type_list_of_sam_file_output_formats_v< type_list< ts... > > :
seqan3::detail
is_type_list_of_sequence_file_input_formats_v :
seqan3::detail
is_type_list_of_sequence_file_input_formats_v< type_list< ts... > > :
seqan3::detail
is_type_list_of_sequence_file_output_formats_v :
seqan3::detail
is_type_list_of_sequence_file_output_formats_v< type_list< ts... > > :
seqan3::detail
is_type_list_of_structure_file_input_formats_v :
seqan3::detail
is_type_list_of_structure_file_input_formats_v< type_list< ts... > > :
seqan3::detail
is_type_list_of_structure_file_output_formats_v :
seqan3::detail
is_type_list_of_structure_file_output_formats_v< type_list< ts... > > :
seqan3::detail
is_uint_adaptation_v :
seqan3::detail
is_unpaired :
seqan3
is_upper :
seqan3
is_xdigit :
seqan3
istreambuf :
seqan3::detail
iter_pointer_t :
seqan3::detail
iterator_concept_tag_t :
seqan3::detail
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