SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented functions with links to the class documentation for each member:
- v -
valid_extensions_help_page_message() :
seqan3::file_validator_base
validate() :
seqan3::detail::fm_index_validator
validate_filename() :
seqan3::file_validator_base
validate_header() :
seqan3::detail::bgzf_compression
validate_query_type() :
seqan3::detail::search_configuration_validator
validate_readability() :
seqan3::file_validator_base
validate_shape() :
seqan3::detail::kmer_hash_view< urng_t >
validate_writeability() :
seqan3::file_validator_base
validation_error() :
seqan3::validation_error
validator_chain_adaptor() :
seqan3::detail::validator_chain_adaptor< validator1_type, validator2_type >
value_list_validator() :
seqan3::value_list_validator< option_value_t >
value_type() :
derived_from_strong_type
,
seqan3::detail::matrix< matrix_t >
vectorised() :
seqan3::align_cfg::vectorised
verify_identifiers() :
seqan3::argument_parser
version_checker() :
seqan3::detail::version_checker
vertical_score() :
seqan3::detail::affine_cell_proxy< tuple_t >
vertical_trace() :
seqan3::detail::affine_cell_proxy< tuple_t >
view_enforce_random_access() :
seqan3::detail::view_enforce_random_access< urng_t >
view_interleave() :
seqan3::detail::view_interleave< urng_t, inserted_rng_t >
view_take_exactly() :
seqan3::detail::view_take_exactly< urng_t, or_throw >
view_take_until() :
seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >
view_to_simd() :
seqan3::detail::view_to_simd< urng_t, simd_t >
view_translate() :
seqan3::detail::view_translate< urng_t >
view_translate_join() :
seqan3::detail::view_translate_join< urng_t >
view_translate_single() :
seqan3::detail::view_translate_single< urng_t >
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