Here is a list of all documented functions with links to the class documentation for each member:

- o -

• off_type() : input_stream_over, output_stream_over
• offset() : seqan3::bi_fm_index_cursor< index_t >, seqan3::fm_index_cursor< index_t >
• offset_type() : structure_file_input_traits
• on_column_iterator_creation() : seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >
• on_hit() : seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >
• on_result() : seqan3::align_cfg::on_result< callback_t >, seqan3::search_cfg::on_result< callback_t >
• on_update() : seqan3::alphabet_tuple_base< derived_type, component_types >::component_proxy< alphabet_type, index >, seqan3::bitpacked_sequence< alphabet_type >::reference_proxy_type
• operator alphabet_type() : seqan3::alphabet_proxy< derived_type, alphabet_type >
• operator bool() : seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• operator matrix_column_value_t() : seqan3::detail::trace_matrix_full< trace_t >::iterator::column_proxy
• operator other_alph_t() : seqan3::semialphabet_any< size >
• operator other_t() : seqan3::alphabet_proxy< derived_type, alphabet_type >
• operator std::pair< first_index_t, second_index_t >() : seqan3::detail::matrix_index< index_t >
• operator std::string() : seqan3::small_string< capacity_ >
• operator std::string_view() : seqan3::small_string< capacity_ >
• operator type() : seqan3::alphabet_tuple_base< derived_type, component_types >
• operator value_t() : seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator value_t &() : seqan3::detail::proxy_reference< value_t >
• operator!() : seqan3::detail::char_predicate_base< derived_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator!=() : seqan3::aligned_allocator< value_t, alignment_v >, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::fm_index_cursor_node< index_t >, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::matrix< matrix_t >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::repeat_view< value_t >::basic_iterator< parent_type >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::hamming_scoring_scheme, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• operator""_aa10li() : seqan3::aa10li
• operator""_aa10murphy() : seqan3::aa10murphy
• operator""_aa20() : seqan3::aa20
• operator""_aa27() : seqan3::aa27
• operator""_cigar_operation() : seqan3::cigar
• operator""_db3() : seqan3::dot_bracket3
• operator""_dna15() : seqan3::dna15
• operator""_dna16sam() : seqan3::dna16sam
• operator""_dna3bs() : seqan3::dna3bs
• operator""_dna4() : seqan3::dna4
• operator""_dna5() : seqan3::dna5
• operator""_dssp9() : seqan3::dssp9
• operator""_phred42() : seqan3::phred42
• operator""_phred63() : seqan3::phred63
• operator""_phred68solexa() : seqan3::phred68solexa
• operator""_phred94() : seqan3::phred94
• operator""_rna15() : seqan3::rna15
• operator""_rna4() : seqan3::rna4
• operator""_rna5() : seqan3::rna5
• operator""_shape() : seqan3::shape
• operator""_tag() : seqan3::sam_tag_dictionary
• operator""_wuss51() : seqan3::wuss< SIZE >
• operator%() : seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator&() : enum_bitwise_operators, seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator&&() : seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator&=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• operator()() : char_predicate, seqan3::advanceable_alignment_coordinate_printer< detail::advanceable_alignment_coordinate< state_t > >, seqan3::alignment_matrix_printer< alignment_matrix_t >, seqan3::alignment_printer< alignment_t >, seqan3::alignment_result_printer< alignment_result< result_value_t > >, seqan3::alphabet_printer< alphabet_t >, seqan3::arithmetic_range_validator< option_value_t >, seqan3::char_sequence_printer< char_sequence_t >, seqan3::cigar_printer< cigar >, seqan3::debug_stream_printer< value_t >, seqan3::default_printer, seqan3::detail::access_restrictor_fn, seqan3::detail::adaptor_base< derived_type, stored_args_ts >, seqan3::detail::adl_only::assign_char_strictly_to_fn, seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >, seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >, seqan3::detail::async_input_buffer_fn, seqan3::detail::char_predicate_base< derived_t >, seqan3::detail::coordinate_matrix< index_t >::convert_to_matrix_coordinate, seqan3::detail::customisation_point_object< derived_t, max_priority >, seqan3::detail::default_validator< option_value_t >, seqan3::detail::edit_distance_algorithm< config_t, traits_t >, seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >, seqan3::detail::interleave_fn, seqan3::detail::iota_simd_view_fn< index_simd_t >, seqan3::detail::istreambuf_fn, seqan3::detail::kmer_hash_fn, seqan3::detail::max_score_banded_updater, seqan3::detail::max_score_updater, seqan3::detail::max_score_updater_simd_global, seqan3::detail::minimiser_fn, seqan3::detail::minimiser_hash_fn, seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >, seqan3::detail::pairwise_alignment_algorithm_banded< alignment_configuration_t, policies_t >, seqan3::detail::repeat_fn, seqan3::detail::repeat_n_fn, seqan3::detail::search_scheme_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::slice_fn, seqan3::detail::take_exactly_fn< or_throw >, seqan3::detail::take_until_fn< or_throw, and_consume >, seqan3::detail::to_simd_fn< simd_t >, seqan3::detail::translate_fn< single >, seqan3::detail::translate_join_fn, seqan3::detail::trim_fn, seqan3::detail::unidirectional_search_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::validator_chain_adaptor< validator1_type, validator2_type >, seqan3::detail::version_checker, seqan3::detail::view_equality_fn, seqan3::dynamic_bitset_printer< dynamic_bitset< bit_capacity > >, seqan3::enumeration_printer< enum_t >, seqan3::file_validator_base, seqan3::input_directory_validator, seqan3::input_file_validator< file_t >, seqan3::input_range_printer< rng_t >, seqan3::integral_printer< integral_t >, seqan3::mask_printer< mask_t >, seqan3::optional_printer< std::nullopt_t >, seqan3::optional_printer< std::optional< T > >, seqan3::output_directory_validator, seqan3::output_file_validator< file_t >, seqan3::regex_validator, seqan3::sam_file_header< ref_ids_type >::key_hasher, seqan3::sam_flag_printer< sam_flag >, seqan3::search_result_printer< search_result< specs_t... > >, seqan3::sequence_printer< sequence_t >, seqan3::simd_printer< simd_t >, seqan3::std_byte_printer< std::byte >, seqan3::std_printer< type_t >, seqan3::std_variant_printer< std::variant< variant_ts... > >, seqan3::strong_type_printer< strong_type_t >, seqan3::trace_directions_printer< detail::trace_directions >, seqan3::tuple_printer< tuple_t >, seqan3::value_list_validator< option_value_t >, seqan3::views::deep< underlying_adaptor_t >, std::hash< alphabet_t >, std::hash< seqan3::dynamic_bitset< cap > >, std::hash< urng_t >, validator
• operator*() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_path_iterator, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator+() : seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::two_dimensional_matrix_iterator< iter_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator++() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >::trace_path_iterator, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator+=() : seqan3::counting_vector< value_t >, seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::two_dimensional_matrix_iterator< iter_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator-() : seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::two_dimensional_matrix_iterator< iter_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator--() : seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator-=() : seqan3::counting_vector< value_t >, seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix_iterator< iter_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >
• operator->() : seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >
• operator/() : seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator<() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator<<() : output_stream_over, seqan3::debug_stream_type< char_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::dynamic_bitset< bit_capacity >
• operator<<=() : seqan3::dynamic_bitset< bit_capacity >
• operator<=() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator=() : seqan3::aa10li, seqan3::aa10murphy, seqan3::aa20, seqan3::aa27, seqan3::algorithm_result_generator_range< algorithm_executor_type >::algorithm_range_iterator, seqan3::algorithm_result_generator_range< algorithm_executor_type >, seqan3::align_cfg::band_fixed_size, seqan3::align_cfg::detail::result_type< alignment_result_t >, seqan3::align_cfg::gap_cost_affine, seqan3::align_cfg::method_global, seqan3::align_cfg::method_local, seqan3::align_cfg::min_score, seqan3::align_cfg::on_result< callback_t >, seqan3::align_cfg::output_alignment, seqan3::align_cfg::output_begin_position, seqan3::align_cfg::output_end_position, seqan3::align_cfg::output_score, seqan3::align_cfg::output_sequence1_id, seqan3::align_cfg::output_sequence2_id, seqan3::align_cfg::score_type< score_t >, seqan3::align_cfg::scoring_scheme< scoring_scheme_t >, seqan3::align_cfg::vectorised, seqan3::aligned_allocator< value_t, alignment_v >, seqan3::alignment_result< alignment_result_value_t >, seqan3::alphabet_base< derived_type, size, char_t >, seqan3::alphabet_proxy< derived_type, alphabet_type >, seqan3::alphabet_tuple_base< derived_type, component_types >::component_proxy< alphabet_type, index >, seqan3::alphabet_tuple_base< derived_type, component_types >, seqan3::alphabet_variant< alternative_types >, seqan3::aminoacid_base< derived_type, size >, seqan3::argument_parser, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::bitpacked_sequence< alphabet_type >::reference_proxy_type, seqan3::bloom_filter< data_layout_mode_ >, seqan3::cigar, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::configuration< configs_t >, seqan3::counting_vector< value_t >, seqan3::debug_stream_type< char_t >, seqan3::detail::adaptor_base< derived_type, stored_args_ts >, seqan3::detail::adaptor_for_view_without_args< view_type >, seqan3::detail::adaptor_from_functor< functor_type, stored_args_ts >, seqan3::detail::advanceable_alignment_coordinate< state >, seqan3::detail::affine_cell_proxy< tuple_t >, seqan3::detail::affine_gap_init_policy< alignment_algorithm_t >, seqan3::detail::affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >, seqan3::detail::algorithm_executor_blocking< resource_t, algorithm_t, algorithm_result_t, execution_handler_t >, seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >, seqan3::detail::alignment_algorithm< config_t, algorithm_policies_t >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >, seqan3::detail::alignment_matrix_policy< alignment_algorithm_t, score_matrix_t, trace_matrix_t >, seqan3::detail::alignment_score_matrix_one_column< score_t >, seqan3::detail::alignment_score_matrix_one_column_banded< score_t >, seqan3::detail::alignment_trace_matrix_full< trace_t, coordinate_only >, seqan3::detail::alignment_trace_matrix_full_banded< trace_t, coordinate_only >, seqan3::detail::async_input_buffer_view< urng_t >::iterator, seqan3::detail::async_input_buffer_view< urng_t >, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::combined_adaptor< left_adaptor_t, right_adaptor_t >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::iterator, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >, seqan3::detail::combined_score_and_trace_matrix< score_matrix_t, trace_matrix_t >::sentinel, seqan3::detail::coordinate_matrix< index_t >::iterator, seqan3::detail::coordinate_matrix< index_t >, seqan3::detail::counted_simd_iterator< index_simd_t >, seqan3::detail::customisation_point_object< derived_t, max_priority >, seqan3::detail::debug_matrix< matrix_t, first_sequence_t, second_sequence_t >, seqan3::detail::debug_mode< wrapped_config_id_t >, seqan3::detail::edit_distance_algorithm< config_t, traits_t >, seqan3::detail::edit_distance_score_matrix_full< word_t, score_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_trace_matrix_full< word_t, is_semi_global, use_max_errors >, seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >, seqan3::detail::edit_distance_unbanded_global_policy< derived_t, edit_traits >, seqan3::detail::edit_distance_unbanded_max_errors_policy< derived_t, edit_traits >, seqan3::detail::edit_distance_unbanded_score_matrix_policy< derived_t, edit_traits >, seqan3::detail::edit_distance_unbanded_semi_global_policy< derived_t, edit_traits >, seqan3::detail::edit_distance_unbanded_trace_matrix_policy< derived_t, edit_traits >, seqan3::detail::execution_handler_parallel::internal_state, seqan3::detail::execution_handler_parallel, seqan3::detail::fast_istreambuf_iterator< char_t, traits_t >, seqan3::detail::fast_ostreambuf_iterator< char_t, traits_t >, seqan3::detail::find_optimum_policy< alignment_algorithm_t >, seqan3::detail::format_help, seqan3::detail::format_help_base< derived_type >, seqan3::detail::format_html, seqan3::detail::format_man, seqan3::detail::format_parse, seqan3::detail::format_sam_base, seqan3::detail::ignore_output_iterator, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::iota_simd_view< index_simd_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::kmer_hash_view< urng_t >, seqan3::detail::latch, seqan3::detail::matrix_index< index_t >, seqan3::detail::minimiser_view< urng1_t, urng2_t >::basic_iterator< const_range >, seqan3::detail::minimiser_view< urng1_t, urng2_t >, seqan3::detail::non_propagating_cache< T >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_alignment_algorithm< alignment_configuration_t, policies_t >, seqan3::detail::pairwise_alignment_algorithm_banded< alignment_configuration_t, policies_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >, seqan3::detail::parallel_mode< wrapped_config_id_t >, seqan3::detail::policy_affine_gap_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_recursion_banded< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion< alignment_configuration_t >, seqan3::detail::policy_affine_gap_with_trace_recursion_banded< alignment_configuration_t >, seqan3::detail::policy_alignment_matrix< traits_t, alignment_matrix_t >, seqan3::detail::policy_alignment_result_builder< alignment_configuration_t >, seqan3::detail::policy_max_error, seqan3::detail::policy_optimum_tracker< alignment_configuration_t, optimum_updater_t >, seqan3::detail::policy_optimum_tracker_simd< alignment_configuration_t, optimum_updater_t >, seqan3::detail::policy_scoring_scheme< alignment_configuration_t, scoring_scheme_t >, seqan3::detail::policy_search_result_builder< search_configuration_t >, seqan3::detail::proxy_reference< value_t >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::reader_writer_manager, seqan3::detail::reader_writer_manager::scoped_reader_type, seqan3::detail::reader_writer_manager::scoped_writer_type, seqan3::detail::repeat_view< value_t >::basic_iterator< parent_type >, seqan3::detail::repeat_view< value_t >, seqan3::detail::safe_filesystem_entry, seqan3::detail::score_matrix_single_column< score_t >::matrix_iterator, seqan3::detail::score_matrix_single_column< score_t >, seqan3::detail::scoring_scheme_policy< alignment_algorithm_t, scoring_scheme_t >, seqan3::detail::search_scheme_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::simd_affine_gap_policy< alignment_algorithm_t, score_t, align_local_t >, seqan3::detail::simd_find_optimum_policy< alignment_algorithm_t, simd_t >, seqan3::detail::simd_match_mismatch_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::simd_matrix_scoring_scheme< simd_score_t, alphabet_t, alignment_t >, seqan3::detail::single_pass_input_view< urng_t >, seqan3::detail::spin_delay, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::trace_iterator< matrix_iter_t >, seqan3::detail::trace_iterator_banded< matrix_iter_t >, seqan3::detail::trace_iterator_base< derived_t, matrix_iter_t >, seqan3::detail::trace_matrix_full< trace_t >::iterator::column_proxy, seqan3::detail::trace_matrix_full< trace_t >::iterator, seqan3::detail::trace_matrix_full< trace_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >::basic_iterator< const_range >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::unidirectional_search_algorithm< configuration_t, index_t, policies_t >, seqan3::detail::validator_chain_adaptor< validator1_type, validator2_type >, seqan3::detail::version_checker, seqan3::detail::view_enforce_random_access< urng_t >::basic_iterator< underlying_iter_t >, seqan3::detail::view_enforce_random_access< urng_t >, seqan3::detail::view_interleave< urng_t, inserted_rng_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_exactly< urng_t, or_throw >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_sentinel< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::detail::view_to_simd< urng_t, simd_t >, seqan3::detail::view_translate< urng_t >, seqan3::detail::view_translate_join< urng_t >, seqan3::detail::view_translate_single< urng_t >, seqan3::dna15, seqan3::dna16sam, seqan3::dna3bs, seqan3::dna4, seqan3::dna5, seqan3::dot_bracket3, seqan3::dssp9, seqan3::dynamic_bitset< bit_capacity >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type, seqan3::exposition_only::cigar_operation, seqan3::file_validator_base, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::format_bam, seqan3::format_embl, seqan3::format_fasta, seqan3::format_fastq, seqan3::format_genbank, seqan3::format_sam, seqan3::format_vienna, seqan3::gap, seqan3::gap_decorator< inner_type >::basic_iterator< bool >, seqan3::gap_decorator< inner_type >, seqan3::hamming_scoring_scheme, seqan3::input_directory_validator, seqan3::input_file_validator< file_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::counting_agent_type< value_t >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type, seqan3::interleaved_bloom_filter< data_layout_mode_ >, seqan3::mask, seqan3::masked< sequence_alphabet_t >, seqan3::nucleotide_base< derived_type, size >, seqan3::output_directory_validator, seqan3::output_file_validator< file_t >, seqan3::phred42, seqan3::phred63, seqan3::phred68solexa, seqan3::phred94, seqan3::phred_base< derived_type, size >, seqan3::pod_tuple< type0, types... >, seqan3::qualified< sequence_alphabet_t, quality_alphabet_t >, seqan3::record< field_types, field_ids >, seqan3::rna15, seqan3::rna4, seqan3::rna5, seqan3::sam_file_header< ref_ids_type >, seqan3::sam_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sam_file_output< selected_field_ids_, valid_formats_, ref_ids_type >, seqan3::sam_record< field_types, field_ids >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >, seqan3::search_cfg::detail::result_type< search_result_t >, seqan3::search_cfg::hit, seqan3::search_cfg::hit_all, seqan3::search_cfg::hit_all_best, seqan3::search_cfg::hit_single_best, seqan3::search_cfg::hit_strata, seqan3::search_cfg::max_error_deletion, seqan3::search_cfg::max_error_insertion, seqan3::search_cfg::max_error_substitution, seqan3::search_cfg::max_error_total, seqan3::search_cfg::on_result< callback_t >, seqan3::search_cfg::output_index_cursor, seqan3::search_cfg::output_query_id, seqan3::search_cfg::output_reference_begin_position, seqan3::search_cfg::output_reference_id, seqan3::search_result< query_id_type, cursor_type, reference_id_type, reference_begin_position_type >, seqan3::semialphabet_any< size >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >::selected_sequence_format< format_t >, seqan3::sequence_file_input< traits_type_, selected_field_ids_, valid_formats_ >::sequence_format_base, seqan3::sequence_file_output< selected_field_ids_, valid_formats_ >, seqan3::sequence_record< field_types, field_ids >, seqan3::shape, seqan3::small_string< capacity_ >, seqan3::small_vector< value_type_, capacity_ >, seqan3::structure_file_input< traits_type_, selected_field_ids_, valid_formats_ >, seqan3::structure_file_output< selected_field_ids_, valid_formats_ >, seqan3::structure_record< field_types, field_ids >, seqan3::structured_aa< sequence_alphabet_t, structure_alphabet_t >, seqan3::structured_rna< sequence_alphabet_t, structure_alphabet_t >, seqan3::value_list_validator< option_value_t >, seqan3::views::deep< underlying_adaptor_t >, seqan3::wuss< SIZE >
• operator==() : seqan3::aligned_allocator< value_t, alignment_v >, seqan3::bi_fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::bi_fm_index_cursor< index_t >, seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::alignment_column_type::iterator_type, seqan3::detail::alignment_matrix_column_major_range_base< derived_t >::iterator_type, seqan3::detail::basic_iterator< single_pass_input_view< view_type > >, seqan3::detail::fm_index_cursor_node< index_t >, seqan3::detail::in_file_iterator< file_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::matrix< matrix_t >, seqan3::detail::out_file_iterator< file_type >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::repeat_view< value_t >::basic_iterator< parent_type >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_take_until< urng_t, fun_t, or_throw, and_consume >::basic_consume_iterator< const_range >, seqan3::detail::view_to_simd< urng_t, simd_t >::iterator_type, seqan3::fm_index< alphabet_t, text_layout_mode_, sdsl_index_type_ >, seqan3::fm_index_cursor< index_t >, seqan3::hamming_scoring_scheme, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >, seqan3::scoring_scheme_base< derived_t, alphabet_t, score_t >
• operator>() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator>=() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::pod_tuple< type0 >, seqan3::pod_tuple< type0, types... >
• operator>>() : input_stream_over, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::dynamic_bitset< bit_capacity >
• operator>>=() : seqan3::dynamic_bitset< bit_capacity >
• operator[]() : seqan3::bitpacked_sequence< alphabet_type >, seqan3::concatenated_sequences< underlying_container_type, data_delimiters_type >, seqan3::detail::inherited_iterator_base< derived_t, base_t >, seqan3::detail::kmer_hash_view< urng_t >::basic_iterator< const_range >, seqan3::detail::pairwise_combine_view< underlying_range_type >::basic_iterator< range_type >, seqan3::detail::random_access_iterator_base< range_type, derived_t_template, args_t >, seqan3::detail::repeat_view< value_t >, seqan3::detail::two_dimensional_matrix< value_t, allocator_t, order >, seqan3::detail::two_dimensional_matrix_iterator_base< derived_t, order >, seqan3::detail::view_interleave< urng_t, inserted_rng_t >, seqan3::detail::view_take_exactly< urng_t, or_throw >::basic_iterator< const_range >, seqan3::detail::view_translate< urng_t >, seqan3::detail::view_translate_join< urng_t >, seqan3::detail::view_translate_single< urng_t >, seqan3::dynamic_bitset< bit_capacity >, seqan3::gap_decorator< inner_type >::basic_iterator< bool >, seqan3::gap_decorator< inner_type >, seqan3::interleaved_bloom_filter< data_layout_mode_ >::membership_agent_type::binning_bitvector, seqan3::small_vector< value_type_, capacity_ >
• operator^() : enum_bitwise_operators, seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator^=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• operator|() : enum_bitwise_operators, seqan3::configuration< configs_t >, seqan3::detail::constexpr_pseudo_bitset< N >, seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator|=() : enum_bitwise_operators, seqan3::dynamic_bitset< bit_capacity >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• operator||() : seqan3::detail::char_predicate_base< derived_t >, seqan3::detail::strong_type< value_t, derived_t, skills_ >
• operator~() : enum_bitwise_operators, seqan3::detail::constexpr_pseudo_bitset< N >, seqan3::detail::strong_type< value_t, derived_t, skills_ >, seqan3::dynamic_bitset< bit_capacity >, seqan3::dynamic_bitset< bit_capacity >::reference_proxy_type
• option_declared_multiple_times() : seqan3::option_declared_multiple_times
• option_type_and_list_info() : seqan3::detail::format_base
• option_value_type() : validator
• out_file_iterator() : seqan3::detail::out_file_iterator< file_type >
• output_alignment() : seqan3::align_cfg::output_alignment
• output_begin_position() : seqan3::align_cfg::output_begin_position
• output_directory_validator() : seqan3::output_directory_validator
• output_end_position() : seqan3::align_cfg::output_end_position
• output_file_validator() : seqan3::output_file_validator< file_t >
• output_index_cursor() : seqan3::search_cfg::output_index_cursor
• output_query_id() : seqan3::search_cfg::output_query_id
• output_reference_begin_position() : seqan3::search_cfg::output_reference_begin_position
• output_reference_id() : seqan3::search_cfg::output_reference_id
• output_score() : seqan3::align_cfg::output_score
• output_sequence1_id() : seqan3::align_cfg::output_sequence1_id
• output_sequence2_id() : seqan3::align_cfg::output_sequence2_id