SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Quick Setup (using CMake)
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Parsing command line arguments with Sharg
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Alphabets in SeqAn
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Sequence File Input and Output
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Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
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Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- t -
take :
seqan3::list_traits
,
seqan3::pack_traits
take_exactly :
seqan3::detail
take_exactly_or_throw :
seqan3::detail
take_last :
seqan3::list_traits
,
seqan3::pack_traits
take_line :
seqan3::detail
take_line_or_throw :
seqan3::detail
take_until :
seqan3::detail
take_until_and_consume :
seqan3::detail
take_until_or_throw :
seqan3::detail
take_until_or_throw_and_consume :
seqan3::detail
text_layout :
seqan3
to_char :
seqan3
,
seqan3::views
to_little_endian() :
seqan3::detail
to_lower() :
seqan3
to_lower_table :
seqan3::detail
to_phred :
seqan3
to_rank :
seqan3
,
seqan3::views
to_simd :
seqan3::views
to_string() :
seqan3::detail
to_upper() :
seqan3
to_upper_table :
seqan3::detail
trace_directions :
seqan3::detail
transfer_template_args_onto_t :
seqan3::detail
transfer_template_vargs_onto_t :
seqan3::detail
transform :
seqan3::list_traits
,
seqan3::pack_traits
transformation_trait_or :
seqan3::detail
transformation_trait_or_t :
seqan3::detail
translate :
seqan3::views
translate_join :
seqan3::views
translate_single :
seqan3::views
translate_triplet() :
seqan3
translation_frames :
seqan3
transpose() :
seqan3::simd
transpose_matrix_avx2() :
seqan3::detail
transpose_matrix_avx512() :
seqan3::detail
transpose_matrix_sse4() :
seqan3::detail
trim_quality :
seqan3::views
tuple_eq_guard :
seqan3::detail
tuple_general_guard :
seqan3::detail
tuple_order_guard :
seqan3::detail
tuple_pop_front() :
seqan3
tuple_split() :
seqan3::detail
,
seqan3
tuple_type_list_t :
seqan3::detail
type_name_as_string :
seqan3::detail
type_reduce :
seqan3::views
type_reduce_t :
seqan3
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3.4.0
3.3.0
3.2.0
3.1.0
3.0.3
3.0.2
3.0.1
3.0.0
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