SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Welcome
Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
Cookbook
About
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Concept List
Here is a list of all documented concepts with brief descriptions:
[detail level
1
2
3
]
▼
N
seqan3
The main SeqAn3 namespace
▼
N
detail
The internal SeqAn3 namespace
R
fields_specialisation
Auxiliary concept that checks whether a type is a specialisation of
seqan3::fields
R
type_list_of_sam_file_input_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::sam_file_input_format
R
type_list_of_sam_file_output_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::sam_file_output_format
R
type_list_of_sequence_file_input_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::sequence_file_input_format
R
type_list_of_sequence_file_output_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::sequence_file_output_format
R
type_list_of_structure_file_input_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::structure_file_input_format
R
type_list_of_structure_file_output_formats
Auxiliary concept that checks whether a type is a
seqan3::type_list
and all types meet
seqan3::structure_file_output_format
R
printable_with
R
nonrecursive_range
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