SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
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Welcome
Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
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Here is a list of all documented namespace members with links to the namespaces they belong to:
- s -
sam_flag :
seqan3
sam_tag_type_char :
seqan3::detail
sam_tag_type_char_extra :
seqan3::detail
sam_tag_variant :
seqan3::detail
sdsl_wt_index_type :
seqan3
search() :
seqan3
search_config_id :
seqan3::detail
search_scheme_block_info() :
seqan3::detail
search_scheme_dyn_type :
seqan3::detail
search_scheme_type :
seqan3::detail
search_ss() :
seqan3::detail
search_ss_children() :
seqan3::detail
search_ss_deletion() :
seqan3::detail
search_ss_exact() :
seqan3::detail
seqan3_version :
seqan3
seqan3_version_cstring :
seqan3
seqan3_version_major :
seqan3
seqan3_version_minor :
seqan3
seqan3_version_patch :
seqan3
set_format() :
seqan3::detail
simd_matrix_coordinate :
seqan3::detail
simd_type_t :
seqan3::simd
single :
seqan3
single_pass_input :
seqan3::views
size :
seqan3::pack_traits
size< type_list< pack_t... > > :
seqan3::list_traits
size_in_values_v :
seqan3::detail
slice :
seqan3::views
small_vector() :
seqan3
split_after :
seqan3::list_traits
,
seqan3::pack_traits
standard :
seqan3
starts_with() :
seqan3::detail
store() :
seqan3::simd
store_avx2() :
seqan3::detail
store_avx512() :
seqan3::detail
store_sse4() :
seqan3::detail
stream_alignment() :
seqan3::detail
strip_cereal_wrapper_t :
seqan3::detail
strip_type_identity_t :
seqan3::detail
strong_type_skill :
seqan3::detail
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