A | B | C | D | E | F | G | H | I | K | L | M | N | O | P | Q | R | S | T | U | V | W | Z

A: aa10li (seqan3); aa10murphy (seqan3); aa20 (seqan3); aa27 (seqan3); access_restrictor_fn (seqan3::detail); adaptor_base (seqan3::detail); adaptor_for_view_without_args (seqan3::detail); adaptor_from_functor (seqan3::detail); advanceable_alignment_coordinate (seqan3::detail); advanceable_alignment_coordinate_printer (seqan3); advanceable_alignment_coordinate_printer< detail::advanceable_alignment_coordinate< state_t > > (seqan3); affine_cell_proxy (seqan3::detail); affine_gap_init_policy (seqan3::detail); affine_gap_policy (seqan3::detail); affine_score_and_trace_cell (seqan3::detail); affine_score_cell (seqan3::detail); affine_trace_cell (seqan3::detail); algorithm_executor_blocking (seqan3::detail); algorithm_result_generator_range::algorithm_range_iterator (seqan3); algorithm_result_generator_range (seqan3); align_pairwise_range_input (seqan3::detail); align_pairwise_single_input (seqan3::detail); align_result_selector (seqan3::detail); aligned_allocator (seqan3); aligned_sequence (seqan3); aligned_sequence_builder (seqan3::detail); alignment_algorithm (seqan3::detail); alignment_algorithm_state (seqan3::detail); alignment_matrix_column_major_range_base::alignment_column_type (seqan3::detail); alignment_configuration_traits (seqan3::detail); alignment_configurator (seqan3::detail); alignment_contract (seqan3::detail); alignment_function_traits (seqan3::detail); alignment_matrix_column_major_range_base (seqan3::detail); alignment_matrix_policy (seqan3::detail); alignment_matrix_printer (seqan3); alignment_matrix_printer< alignment_matrix_t > (seqan3); alignment_optimum (seqan3::detail); alignment_printer (seqan3); alignment_printer< alignment_t > (seqan3); format_bam::alignment_record_core (seqan3); alignment_result (seqan3); alignment_result_printer (seqan3); alignment_result_printer< alignment_result< result_value_t > > (seqan3); alignment_result_value_type (seqan3::detail); alignment_result_value_type_accessor< alignment_result< result_value_t > > (seqan3::detail); alignment_score_matrix_one_column (seqan3::detail); alignment_score_matrix_one_column_banded (seqan3::detail); alignment_score_matrix_one_column_base (seqan3::detail); alignment_score_matrix_proxy (seqan3::detail); alignment_trace_matrix_base (seqan3::detail); alignment_trace_matrix_full (seqan3::detail); alignment_trace_matrix_full_banded (seqan3::detail); alignment_trace_matrix_proxy (seqan3::detail); alphabet (seqan3::custom); alphabet (seqan3); alphabet< char_type > (seqan3::custom); alphabet< uint_type > (seqan3::custom); alphabet_base (seqan3); alphabet_printer (seqan3); alphabet_printer< alphabet_t > (seqan3); alphabet_proxy (seqan3); alphabet_size_cpo (seqan3::detail::adl_only); alphabet_tuple_base (seqan3); alphabet_tuple_like (seqan3::detail); alphabet_variant (seqan3); aminoacid_alphabet (seqan3); aminoacid_base (seqan3); aminoacid_empty_base (seqan3); aminoacid_scoring_scheme (seqan3); argument_parser (seqan3); argument_parser_compatible_option (seqan3); argument_parser_error (seqan3); argument_parser_meta_data (seqan3); argument_parsing (seqan3::custom); arithmetic (seqan3); arithmetic_or_simd (seqan3::detail); arithmetic_range_validator (seqan3); assign_char_strictly_to_fn (seqan3::detail::adl_only); assign_char_to_cpo (seqan3::detail::adl_only); assign_phred_to_cpo (seqan3::detail::adl_only); assign_rank_to_cpo (seqan3::detail::adl_only); assignable_from (seqan3::detail); async_input_buffer_fn (seqan3::detail); async_input_buffer_view (seqan3::detail)

B: band_fixed_size (seqan3::align_cfg); view_take_until::basic_consume_iterator (seqan3::detail); basic_iterator (seqan3::detail); kmer_hash_view::basic_iterator (seqan3::detail); minimiser_view::basic_iterator (seqan3::detail); pairwise_combine_view::basic_iterator (seqan3::detail); repeat_view::basic_iterator (seqan3::detail); two_dimensional_matrix::basic_iterator (seqan3::detail); view_enforce_random_access::basic_iterator (seqan3::detail); view_take_exactly::basic_iterator (seqan3::detail); gap_decorator::basic_iterator (seqan3); basic_iterator< single_pass_input_view< view_type > > (seqan3::detail); view_take_until::basic_sentinel (seqan3::detail); bgzf_compression (seqan3::detail); bi_fm_index (seqan3); bi_fm_index_cursor (seqan3); bin_count (seqan3); bin_index (seqan3); bin_literal (seqan3); bin_size (seqan3); interleaved_bloom_filter::membership_agent_type::binning_bitvector (seqan3); dynamic_bitset::bitfield (seqan3); bitpacked_sequence (seqan3); bloom_filter (seqan3); builtin_character (seqan3); builtin_simd (seqan3::detail); builtin_simd< scalar_t, length > (seqan3::detail); builtin_simd_traits_helper (seqan3::detail); builtin_simd_traits_helper< builtin_simd_t > (seqan3::detail); bz2_compression (seqan3::detail)

C: cereal_archive (seqan3); cereal_input_archive (seqan3); cereal_output_archive (seqan3); cereal_text_archive (seqan3); cerealisable (seqan3); char_is_valid_for_cpo (seqan3::detail::adl_only); char_predicate (seqan3::detail); char_predicate_base (seqan3::detail); char_predicate_disjunction (seqan3::detail); char_predicate_negator (seqan3::detail); char_sequence_printer (seqan3); char_sequence_printer< char_sequence_t > (seqan3); chunked_indexed_sequence_pairs (seqan3::detail); cigar (seqan3); cigar_clipped_bases (seqan3); cigar_operation (seqan3::exposition_only); cigar_printer (seqan3); cigar_printer< cigar > (seqan3); column_index_type (seqan3::detail); trace_matrix_full::iterator::column_proxy (seqan3::detail); edit_distance_score_matrix_full::column_type (seqan3::detail); edit_distance_trace_matrix_full::column_type (seqan3::detail); combined_adaptor (seqan3::detail); combined_score_and_trace_matrix (seqan3::detail); complement_cpo (seqan3::detail::adl_only); alphabet_tuple_base::component_proxy (seqan3); edit_distance_unbanded::compute_state (seqan3::detail); edit_distance_unbanded::compute_state_trace_matrix (seqan3::detail); concatenated_sequences (seqan3); config_element (seqan3::detail); config_element_pipeable_with (seqan3::detail); configuration (seqan3); format_help::console_layout_struct (seqan3::detail); const_iterable_range (seqan3); constexpr_alphabet (seqan3::detail); constexpr_pseudo_bitset (seqan3::detail); constexpr_semialphabet (seqan3::detail); constructible_from (seqan3::detail); container (seqan3); coordinate_matrix::convert_to_matrix_coordinate (seqan3::detail); convertable_to_through_char_representation (seqan3::detail); coordinate_matrix (seqan3::detail); counted_simd_iterator (seqan3::detail); interleaved_bloom_filter::counting_agent_type (seqan3); counting_vector (seqan3); customisation_point_object (seqan3::detail)

E: edit_distance_algorithm (seqan3::detail); edit_distance_score_matrix_full (seqan3::detail); edit_distance_trace_matrix_full (seqan3::detail); edit_distance_unbanded (seqan3::detail); edit_distance_unbanded_global_policy (seqan3::detail); edit_distance_unbanded_max_errors_policy (seqan3::detail); edit_distance_unbanded_score_matrix_policy (seqan3::detail); edit_distance_unbanded_semi_global_policy (seqan3::detail); edit_distance_unbanded_trace_matrix_policy (seqan3::detail); empty_state (seqan3::detail); empty_type (seqan3::detail); enable_aminoacid_cpo (seqan3::detail::adl_only); enum_bitwise_operators (seqan3); enumeration_names_cpo (seqan3::detail::adl_only); enumeration_printer (seqan3); enumeration_printer< enum_t > (seqan3); error_count (seqan3::search_cfg); error_rate (seqan3::search_cfg); execution_handler_parallel (seqan3::detail); execution_handler_sequential (seqan3::detail); explicitly_convertible_to (seqan3); extension_score (seqan3::align_cfg)

F: fast_istreambuf_iterator (seqan3::detail); fast_ostreambuf_iterator (seqan3::detail); fields (seqan3); file_open_error (seqan3); file_validator_base (seqan3); find_optimum_policy (seqan3::detail); fm_index (seqan3); fm_index_cursor (seqan3); fm_index_cursor_node (seqan3::detail); fm_index_validator (seqan3::detail); format_bam (seqan3); format_base (seqan3::detail); format_copyright (seqan3::detail); format_embl (seqan3); format_error (seqan3); format_fasta (seqan3); format_fastq (seqan3); format_genbank (seqan3); format_help (seqan3::detail); format_help_base (seqan3::detail); format_html (seqan3::detail); format_man (seqan3::detail); format_parse (seqan3::detail); format_sam (seqan3); format_sam_base (seqan3::detail); format_short_help (seqan3::detail); debug_matrix::format_type (seqan3::detail); format_version (seqan3::detail); format_vienna (seqan3); free_end_gaps_sequence1_leading (seqan3::align_cfg); free_end_gaps_sequence1_trailing (seqan3::align_cfg); free_end_gaps_sequence2_leading (seqan3::align_cfg); free_end_gaps_sequence2_trailing (seqan3::align_cfg); function_traits< std::function< return_t(args_t...)> > (seqan3)

G: gap (seqan3); gap_cost_affine (seqan3::align_cfg); gap_decorator (seqan3); gap_erase_failure (seqan3); gz_compression (seqan3::detail)

I: ignore_output_iterator (seqan3::detail); implicitly_convertible_from (seqan3::detail); implicitly_convertible_to (seqan3); in_file_iterator (seqan3::detail); indexed_sequence_pair_range (seqan3::detail); inherited_iterator_base (seqan3::detail); input_directory_validator (seqan3); input_file_validator (seqan3); input_range_printer (seqan3); input_range_printer< rng_t > (seqan3); input_stream_over (seqan3); instantiate (seqan3::detail); instantiate< lazy< template_t, spec_t... > > (seqan3::detail); instantiate_if (seqan3::detail); instantiate_if< lazy< template_t, spec_t... >, true > (seqan3::detail); instantiate_if< t, true > (seqan3::detail); integer_sequence_printer (seqan3); integer_sequence_printer< integer_sequence_t > (seqan3); integral_printer (seqan3); integral_printer< integral_t > (seqan3); interleave_fn (seqan3::detail); interleaved_bloom_filter (seqan3); execution_handler_parallel::internal_state (seqan3::detail); invalid_alignment_configuration (seqan3); invalid_char_assignment (seqan3); io_error (seqan3); iota_simd_view (seqan3::detail); iota_simd_view_fn (seqan3::detail); is_builtin_simd (seqan3::detail); is_char_type (seqan3::detail); is_class_template_declarable_with (seqan3::detail); is_constexpr_default_constructible (seqan3); is_container_option (seqan3::detail); is_derived_from_record (seqan3::detail); is_in_interval_type (seqan3::detail); is_native_builtin_simd (seqan3::detail); is_pair_close_cpo (seqan3::detail::adl_only); is_pair_open_cpo (seqan3::detail::adl_only); is_same_configuration_f (seqan3::detail); is_span (seqan3::detail); is_type_specialisation_of (seqan3::detail); is_type_specialisation_of< source_t< source_args... >, source_t > (seqan3::detail); is_unpaired_cpo (seqan3::detail::adl_only); is_value_specialisation_of< source_t< source_args... >, source_t > (seqan3::detail); istreambuf_fn (seqan3::detail); iter_pointer (seqan3::detail); async_input_buffer_view::iterator (seqan3::detail); combined_score_and_trace_matrix::iterator (seqan3::detail); coordinate_matrix::iterator (seqan3::detail); trace_matrix_full::iterator (seqan3::detail); alignment_matrix_column_major_range_base::alignment_column_type::iterator_type (seqan3::detail); alignment_matrix_column_major_range_base::iterator_type (seqan3::detail); view_to_simd::iterator_type (seqan3::detail)

K: sam_file_header::key_hasher (seqan3); kmer_hash_fn (seqan3::detail); kmer_hash_view (seqan3::detail)

L: latch (seqan3::detail); lazy (seqan3::detail); lazy_conditional (seqan3::detail); lower_diagonal (seqan3::align_cfg)

M: make_aligned_sequence_type (seqan3::detail); make_pairwise_alignment_type (seqan3::detail); mask (seqan3); mask_printer (seqan3); mask_printer< mask_t > (seqan3); masked (seqan3); match_score (seqan3); matrix (seqan3::detail); matrix_index (seqan3::detail); score_matrix_single_column::matrix_iterator (seqan3::detail); max_error_deletion (seqan3::search_cfg); max_error_insertion (seqan3::search_cfg); max_error_substitution (seqan3::search_cfg); max_error_total (seqan3::search_cfg); edit_distance_trace_matrix_full::max_errors_state (seqan3::detail); edit_distance_score_matrix_full::max_errors_state (seqan3::detail); max_pseudoknot_depth_cpo (seqan3::detail::adl_only); max_score_banded_updater (seqan3::detail); max_score_updater (seqan3::detail); max_score_updater_simd_global (seqan3::detail); maybe_inherited_iterator_category (seqan3::detail); maybe_iterator_category (seqan3::detail); interleaved_bloom_filter::membership_agent_type (seqan3); method_global (seqan3::align_cfg); method_local (seqan3::align_cfg); min_score (seqan3::align_cfg); minimiser_fn (seqan3::detail); minimiser_hash_fn (seqan3::detail); minimiser_view (seqan3::detail); mismatch_score (seqan3); multi_invocable (seqan3::detail)

N: named_enumeration (seqan3); no_printer_found (seqan3); non_propagating_cache (seqan3::detail); nonrecursive_range (seqan3); nucleotide_alphabet (seqan3); nucleotide_base (seqan3); nucleotide_scoring_scheme (seqan3); number_cols (seqan3::detail); number_rows (seqan3::detail)

P: pair_like (seqan3); pairwise_alignment (seqan3::detail); pairwise_alignment_algorithm (seqan3::detail); pairwise_alignment_algorithm_banded (seqan3::detail); pairwise_combine_view (seqan3::detail); parallel_mode (seqan3::detail); parse_error (seqan3); phred42 (seqan3); phred63 (seqan3); phred68solexa (seqan3); phred94 (seqan3); phred_base (seqan3); pipeable_config_element (seqan3); pod_tuple (seqan3); pod_tuple< type0 > (seqan3); pod_tuple< type0, types... > (seqan3); policy_affine_gap_recursion (seqan3::detail); policy_affine_gap_recursion_banded (seqan3::detail); policy_affine_gap_with_trace_recursion (seqan3::detail); policy_affine_gap_with_trace_recursion_banded (seqan3::detail); policy_alignment_matrix (seqan3::detail); policy_alignment_result_builder (seqan3::detail); policy_max_error (seqan3::detail); policy_optimum_tracker (seqan3::detail); policy_optimum_tracker_simd (seqan3::detail); policy_scoring_scheme (seqan3::detail); policy_search_result_builder (seqan3::detail); printable_with (seqan3); printer_order (seqan3); priority_tag (seqan3::detail); priority_tag< 0 > (seqan3::detail); proxy_reference (seqan3::detail); pseudo_random_access_fn (seqan3::detail); pseudo_random_access_iterator (seqan3); pseudo_random_access_range (seqan3); pseudoknot_id_cpo (seqan3::detail::adl_only)

Q: qualified (seqan3); quality_alphabet (seqan3)

R: random_access_container (seqan3); random_access_iterator (seqan3::detail); random_access_iterator_base (seqan3::detail); range_innermost_value (seqan3); reader_count (seqan3::detail); reader_writer_manager (seqan3::detail); aligned_allocator::rebind (seqan3); record (seqan3); record_like (seqan3::detail); recursive_required_types (seqan3::detail); recursive_required_types< t > (seqan3::detail); ref_info_not_given (seqan3); bitpacked_sequence::reference_proxy_type (seqan3); dynamic_bitset::reference_proxy_type (seqan3); regex_validator (seqan3); remove_rvalue_reference (seqan3); repeat_fn (seqan3::detail); repeat_n_fn (seqan3::detail); repeat_view (seqan3::detail); required_option_missing (seqan3); required_types (seqan3::detail); required_types< t > (seqan3::detail); reservible_container (seqan3); result_type (seqan3::align_cfg::detail); aligned_sequence_builder::result_type (seqan3::detail); result_type (seqan3::search_cfg::detail); reverse_fm_index (seqan3::detail); rna15 (seqan3); rna4 (seqan3); rna5 (seqan3); rna_structure_alphabet (seqan3); row_index_type (seqan3::detail)

S: safe_filesystem_entry (seqan3::detail); sam_file_header (seqan3); sam_file_input (seqan3); sam_file_input_default_traits (seqan3); sam_file_input_format (seqan3); sam_file_input_format_exposer (seqan3::detail); sam_file_input_options (seqan3); sam_file_input_traits (seqan3); sam_file_output (seqan3); sam_file_output_format (seqan3); sam_file_output_format_exposer (seqan3::detail); sam_file_output_options (seqan3); sam_file_program_info_t (seqan3); sam_flag_printer (seqan3); sam_flag_printer< sam_flag > (seqan3); sam_record (seqan3); sam_tag_dictionary (seqan3); sam_tag_type (seqan3); reader_writer_manager::scoped_reader_type (seqan3::detail); reader_writer_manager::scoped_writer_type (seqan3::detail); score_matrix_single_column (seqan3::detail); edit_distance_score_matrix_full::score_matrix_state (seqan3::detail); score_type (seqan3::align_cfg); scoring_scheme (seqan3::align_cfg); scoring_scheme_base (seqan3); scoring_scheme_for (seqan3); scoring_scheme_policy (seqan3::detail); sdsl_index (seqan3::detail); search (seqan3::detail); search_configuration_validator (seqan3::detail); search_configurator (seqan3::detail); search_dyn (seqan3::detail); search_param (seqan3::detail); search_result (seqan3); search_result_printer (seqan3); search_result_printer< search_result< specs_t... > > (seqan3); search_scheme_algorithm (seqan3::detail); search_traits (seqan3::detail); seed (seqan3); selector::select (seqan3::detail); alignment_configurator::select_find_optimum_policy (seqan3::detail); alignment_configurator::select_gap_policy (seqan3::detail); alignment_configurator::select_gap_recursion_policy (seqan3::detail); alignment_configurator::select_matrix_policy (seqan3::detail); search_configurator::select_search_algorithm (seqan3::detail); search_configurator::select_search_result (seqan3::detail); select_types_with_ids (seqan3::detail); sequence_file_input::selected_sequence_format (seqan3); selector (seqan3::detail); semialphabet (seqan3); semialphabet_any (seqan3); combined_score_and_trace_matrix::sentinel (seqan3::detail); sequence (seqan3); sequence_container (seqan3); sequence_file_input (seqan3); sequence_file_input_default_traits_aa (seqan3); sequence_file_input_default_traits_dna (seqan3); sequence_file_input_format (seqan3); sequence_file_input_format_exposer (seqan3::detail); sequence_file_input_options (seqan3); sequence_file_input_traits (seqan3); sequence_file_output (seqan3); sequence_file_output_format (seqan3); sequence_file_output_format_exposer (seqan3::detail); sequence_file_output_options (seqan3); sequence_file_input::sequence_format_base (seqan3); sequence_pair (seqan3::detail); sequence_pair_range (seqan3::detail); sequence_printer (seqan3); sequence_printer< sequence_t > (seqan3); sequence_record (seqan3); shape (seqan3); simd_affine_gap_policy (seqan3::detail); simd_concept (seqan3::simd); simd_find_optimum_policy (seqan3::detail); simd_global_alignment_state (seqan3::detail); simd_index (seqan3::simd); simd_match_mismatch_scoring_scheme (seqan3::detail); simd_matrix_scoring_scheme (seqan3::detail); simd_printer (seqan3); simd_printer< simd_t > (seqan3); simd_traits (seqan3::simd); simd_traits (seqan3); simd_traits< builtin_simd_t > (seqan3::simd); simd_traits< builtin_simd_t > (seqan3); simd_type (seqan3::simd); simd_type (seqan3); single_pass_input_view (seqan3::detail); slice_fn (seqan3::detail); small_string (seqan3); small_vector (seqan3); spin_delay (seqan3::detail); standard_layout (seqan3); async_input_buffer_view::state (seqan3::detail); single_pass_input_view::state (seqan3::detail); std_byte_printer (seqan3); std_byte_printer< std::byte > (seqan3); std_printer (seqan3); std_printer< type_t > (seqan3); std_variant_printer (seqan3); std_variant_printer< std::variant< variant_ts... > > (seqan3); stream_buffer_exposer (seqan3::detail); strong_type (seqan3::detail); strong_type_printer (seqan3); strong_type_printer< strong_type_t > (seqan3); structure_file_input (seqan3); structure_file_input_default_traits_aa (seqan3); structure_file_input_default_traits_rna (seqan3); structure_file_input_format (seqan3); structure_file_input_format_exposer (seqan3::detail); structure_file_input_options (seqan3); structure_file_input_traits (seqan3); structure_file_output (seqan3); structure_file_output_format (seqan3); structure_file_output_format_exposer (seqan3::detail); structure_file_output_options (seqan3); structure_record (seqan3); structured_aa (seqan3); structured_rna (seqan3); suffix_array_interval (seqan3)

T: take_exactly_fn (seqan3::detail); take_until_fn (seqan3::detail); template_specialisation_of (seqan3::detail); to_char_cpo (seqan3::detail::adl_only); to_phred_cpo (seqan3::detail::adl_only); to_rank_cpo (seqan3::detail::adl_only); to_simd_fn (seqan3::detail); too_few_arguments (seqan3); too_many_arguments (seqan3); trace_directions_printer (seqan3); trace_directions_printer< detail::trace_directions > (seqan3); trace_iterator (seqan3::detail); trace_iterator_banded (seqan3::detail); trace_iterator_base (seqan3::detail); trace_matrix_full (seqan3::detail); edit_distance_trace_matrix_full::trace_matrix_state (seqan3::detail); edit_distance_trace_matrix_full::trace_path_iterator (seqan3::detail); tracedirections_or_simd (seqan3::detail); transfer_template_args_onto< source_template< source_arg_types... >, target_template > (seqan3::detail); transfer_template_vargs_onto< source_template< source_varg_types... >, target_template > (seqan3::detail); transfer_type_modifier_onto (seqan3::detail); transformation_trait (seqan3); translate_fn (seqan3::detail); translate_join_fn (seqan3::detail); translation_table (seqan3::detail); translation_table< dna15, seqan3::genetic_code::canonical, void_type > (seqan3::detail); trim_fn (seqan3::detail); trivial (seqan3); trivially_copyable (seqan3); trivially_destructible (seqan3); tuple_element< elem_no, seqan3::record< field_types, field_ids > > (std); tuple_element< elem_no, seqan3::sam_record< field_types, field_ids > > (std); tuple_element< elem_no, seqan3::sequence_record< field_types, field_ids > > (std); tuple_element< elem_no, seqan3::structure_record< field_types, field_ids > > (std); tuple_element< i, t< types... > > (std); tuple_element< i, tuple_t > (std); tuple_element< pos, seqan3::configuration< configs_t... > > (std); tuple_get (seqan3::detail); tuple_like (seqan3); tuple_printer (seqan3); tuple_printer< tuple_t > (seqan3); tuple_size (seqan3::detail); tuple_size< seqan3::configuration< configs_t... > > (std); tuple_size< seqan3::record< field_types, field_ids > > (std); tuple_size< seqan3::sam_record< field_types, field_ids > > (std); tuple_size< seqan3::sequence_record< field_types, field_ids > > (std); tuple_size< seqan3::structure_record< field_types, field_ids > > (std); tuple_size< t< types... > > (std); tuple_size< tuple_t > (std); tuple_type_list (seqan3::detail); two_dimensional_matrix (seqan3::detail); two_dimensional_matrix_iterator (seqan3::detail); two_dimensional_matrix_iterator_base (seqan3::detail); type_list (seqan3); type_list_expander< type_list_t< args_t... > > (seqan3::detail); type_reduce_fn (seqan3::detail)

Z: zstd_compression (seqan3::detail)