quality_alphabet Interface Reference

A concept that indicates whether an alphabet represents quality scores. More...

#include <seqan3/alphabet/quality/concept.hpp>

Inheritance diagram for quality_alphabet:

Additional Inherited Members
Related Symbols inherited from semialphabet
template<cereal_output_archive archive_t, semialphabet alphabet_t>
alphabet_rank_t< alphabet_t >	save_minimal (archive_t const &, alphabet_t const &l)
	Save an alphabet letter to stream.
template<cereal_input_archive archive_t, typename wrapped_alphabet_t >
void	load_minimal (archive_t const &, wrapped_alphabet_t &&l, alphabet_rank_t< detail::strip_cereal_wrapper_t< wrapped_alphabet_t > > const &r)
	Restore an alphabet letter from a saved rank.

Detailed Descriptionstable-api

A concept that indicates whether an alphabet represents quality scores.

In addition to the requirements for seqan3::alphabet, the quality_alphabet introduces a requirement for conversion functions from and to a Phred score.

Concepts and doxygen

Requirements

1. t shall model seqan3::alphabet
2. seqan3::to_phred needs to be defined for objects of type t

See the documentation pages for the respective requirements.

Related types

If a given type t models this concept, the following types typically do so, as well:

• t &
• t const
• t const &

This entity is stable. Since version 3.1.

---

The documentation for this interface was generated from the following file:

• alphabet/quality/concept.hpp