seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >::compute_state Struct Reference

The internal state needed to compute the alignment. More...

Inheritance diagram for seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >::compute_state:

Public Types
using	hp_type = std::conditional_t< edit_traits::compute_trace_matrix, proxy_reference< word_type >, word_type >
	The type of hp.

Public Attributes
word_type	b {}
	The machine word which stores wether the current character matches.
word_type	carry_d0 {}
	The carry-bit of d0.
word_type	carry_hn {}
	The carry-bit of hn.
word_type	carry_hp {hp0}
	The carry-bit of hp.
word_type	d0 {}
	The machine word which stores the diagonal differences.
word_type	hn {}
	The machine word which stores the negative horizontal differences.
hp_type	hp {}
	The machine word which stores the positive horizontal differences.
proxy_reference< word_type >	vn {}
	The machine word which stores the negative vertical differences.
proxy_reference< word_type >	vp {}
	The machine word which stores the positive vertical differences.

Detailed Descriptionno-api

template<std::ranges::viewable_range database_t, std::ranges::viewable_range query_t, typename align_config_t, typename edit_traits>
struct seqan3::detail::edit_distance_unbanded< database_t, query_t, align_config_t, edit_traits >::compute_state

The internal state needed to compute the alignment.

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The documentation for this struct was generated from the following file:

• edit_distance_unbanded.hpp