matrix_concept.hpp

Go to the documentation of this file.

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <concepts>
#include <cstddef>
#include <limits>
 
#include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
 
namespace seqan3::detail
{
 
template <typename score_type>
constexpr score_type matrix_inf = std::numeric_limits<score_type>::max();
 
template <typename matrix_t>
concept matrix = requires (std::remove_cvref_t<matrix_t> m) {
    typename std::remove_cvref_t<matrix_t>::value_type;
 
    typename std::remove_cvref_t<matrix_t>::reference;
 
    typename std::remove_cvref_t<matrix_t>::size_type;
 
    { m.cols() } -> std::same_as<typename std::remove_cvref_t<matrix_t>::size_type>;
 
    { m.rows() } -> std::same_as<typename std::remove_cvref_t<matrix_t>::size_type>;
 
    { m.at(matrix_coordinate{}) } -> std::same_as<typename std::remove_cvref_t<matrix_t>::reference>;
};
 
// Workaround for https://github.com/doxygen/doxygen/issues/9379
#if SEQAN3_DOXYGEN_ONLY(1) 0
template <typename matrix_t>
class matrix
{};
class matrix {…};
#endif
 
 
template <matrix matrix1_t, matrix matrix2_t>
    requires std::equality_comparable_with<typename matrix1_t::reference, typename matrix2_t::reference>
inline bool operator==(matrix1_t const & lhs, matrix2_t const & rhs) noexcept
{
    if (lhs.rows() != rhs.rows())
        return false;
 
    if (lhs.cols() != rhs.cols())
        return false;
 
    for (size_t row = 0u; row < lhs.rows(); ++row)
        for (size_t col = 0u; col < lhs.cols(); ++col)
            if (matrix_coordinate co{row_index_type{row}, column_index_type{col}}; lhs.at(co) != rhs.at(co))
                return false;
 
    return true;
}
inline bool operator==(matrix1_t const & lhs, matrix2_t const & rhs) noexcept {…}
 
template <matrix matrix1_t, matrix matrix2_t>
    requires std::equality_comparable_with<typename matrix1_t::reference, typename matrix2_t::reference>
inline bool operator!=(matrix1_t const & lhs, matrix2_t const & rhs) noexcept
{
    return !(lhs == rhs);
}
inline bool operator!=(matrix1_t const & lhs, matrix2_t const & rhs) noexcept {…}
 
} // namespace seqan3::detail