trace_iterator_banded.hpp

Go to the documentation of this file.

// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
// SPDX-License-Identifier: BSD-3-Clause
 
#pragma once
 
#include <seqan3/alignment/matrix/detail/trace_iterator_base.hpp>
 
namespace seqan3::detail
{
 
template <two_dimensional_matrix_iterator matrix_iter_t>
class trace_iterator_banded : public trace_iterator_base<trace_iterator_banded<matrix_iter_t>, matrix_iter_t>
{
private:
    static_assert(std::same_as<std::iter_value_t<matrix_iter_t>, trace_directions>,
                  "Value type of the underlying iterator must be trace_directions.");
 
    using base_t = trace_iterator_base<trace_iterator_banded<matrix_iter_t>, matrix_iter_t>;
 
    friend base_t;
 
public:
    constexpr trace_iterator_banded() = default;                                          
    constexpr trace_iterator_banded(trace_iterator_banded const &) = default;             
    constexpr trace_iterator_banded(trace_iterator_banded &&) = default;                  
    constexpr trace_iterator_banded & operator=(trace_iterator_banded const &) = default; 
    constexpr trace_iterator_banded & operator=(trace_iterator_banded &&) = default;      
    ~trace_iterator_banded() = default;                                                   
 
    template <typename index_t>
    constexpr trace_iterator_banded(matrix_iter_t const matrix_iter,
                                    column_index_type<index_t> const & pivot_column) noexcept :
        base_t{matrix_iter},
        pivot_column{static_cast<size_t>(pivot_column.get())}
    {}
    constexpr trace_iterator_banded(matrix_iter_t const matrix_iter, {…}
 
    template <two_dimensional_matrix_iterator other_matrix_iter_t>
        requires std::constructible_from<matrix_iter_t, other_matrix_iter_t>
    constexpr trace_iterator_banded(trace_iterator_banded<other_matrix_iter_t> const other) noexcept : base_t{other}
    {}
    constexpr trace_iterator_banded(trace_iterator_banded<other_matrix_iter_t> const other) noexcept : base_t{other} {…}
 
    [[nodiscard]] constexpr matrix_coordinate coordinate() const noexcept
    {
        auto coord = base_t::coordinate();
        coord.row += static_cast<int32_t>(coord.col - pivot_column);
        return coord;
    }
    [[nodiscard]] constexpr matrix_coordinate coordinate() const noexcept {…}
 
private:
    constexpr void go_left(matrix_iter_t & iter) const noexcept
    {
        // Note, in the banded matrix, the columns are virtually shifted by one cell.
        // So going left means go to the previous column and then one row down.
        iter -= matrix_offset{row_index_type{-1}, column_index_type{1}};
    }
    constexpr void go_left(matrix_iter_t & iter) const noexcept {…}
 
    constexpr void go_diagonal(matrix_iter_t & iter) const noexcept
    {
        // Note, in the banded matrix, the columns are virtually shifted by one cell.
        // So going diagonal means go to the previous column and stay in the same row.
        iter -= matrix_offset{row_index_type{0}, column_index_type{1}};
    }
    constexpr void go_diagonal(matrix_iter_t & iter) const noexcept {…}
 
    size_t pivot_column{}; 
};
class trace_iterator_banded : public trace_iterator_base<trace_iterator_banded<matrix_iter_t>, matrix_iter_t> {…};
 
} // namespace seqan3::detail