SeqAn3
3.4.0-rc.4
The Modern C++ library for sequence analysis.
Toggle main menu visibility
Welcome
Setup
Setting up library tests
Quick Setup (using CMake)
Tutorial
First steps with SeqAn
Parsing command line arguments with Sharg
C++ Concepts
Alphabets in SeqAn
Ranges
Minimisers
Sequence File Input and Output
Pairwise Alignment
Indexing and searching with SeqAn
SAM Input and Output in SeqAn
Implementing your own read mapper with SeqAn
How-To
Porting from SeqAn2
How to write an argument parser with subcommands
How to serialise SeqAn data structures
How to write a view
How to write your own alphabet
Cookbook
About
Stability and long-term promises
Citing
Customisation
Changelog
Copyright
Code of Conduct
Contributing
API Reference
API Reference (details)
Namespace List
Namespace List
Namespace Members
All
a
b
c
d
e
f
g
h
i
j
k
l
m
o
p
r
s
t
u
v
w
z
Functions
a
b
c
e
f
g
i
k
l
m
o
p
r
s
t
u
v
w
Variables
a
b
c
d
e
f
h
i
k
m
o
p
r
s
t
v
Typedefs
a
b
c
d
e
f
g
i
j
m
p
r
s
t
u
v
z
Enumerations
Enumerator
Concept List
Class List
Class List
Class Index
Class Hierarchy
Class Members
All
:
_
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w
~
Functions
_
a
b
c
d
e
f
g
h
i
j
k
l
m
n
o
p
q
r
s
t
u
v
w
~
Variables
_
a
b
c
d
e
f
g
h
i
l
m
n
o
p
q
r
s
t
u
v
w
Typedefs
a
b
c
d
e
f
g
h
i
k
l
m
n
o
p
q
r
s
t
u
v
w
Enumerations
Enumerator
Related Symbols
:
a
b
c
d
e
g
o
r
s
t
File List
File List
File Members
All
c
i
s
Variables
Macros
c
s
•
All
Classes
Namespaces
Files
Functions
Variables
Typedefs
Enumerations
Enumerator
Friends
Macros
Modules
Pages
Concepts
Loading...
Searching...
No Matches
translation_genetic_code.hpp
Go to the documentation of this file.
1
// SPDX-FileCopyrightText: 2006-2025 Knut Reinert & Freie Universität Berlin
2
// SPDX-FileCopyrightText: 2016-2025 Knut Reinert & MPI für molekulare Genetik
3
// SPDX-License-Identifier: BSD-3-Clause
4
10
#pragma once
11
12
#include <
seqan3/core/platform.hpp
>
13
14
namespace
seqan3
15
{
24
enum struct
genetic_code
: uint8_t
25
{
26
canonical
= 1,
27
// vert_mitochondrial,
28
// yeast_mitochondrial,
29
// mold_mitochondrial,
30
// invert_mitochondrial,
31
// ciliate,
32
// flatworm_mitochondrial = 9,
33
// euplotid,
34
// prokaryote,
35
// alt_yeast,
36
// ascidian_mitochondrial,
37
// alt_flatworm_mitochondrial,
38
// blepharisma,
39
// chlorophycean_mitochondrial,
40
// trematode_mitochondrial = 21,
41
// scenedesmus_mitochondrial,
42
// thraustochytrium_mitochondrial,
43
// pterobranchia_mitochondrial,
44
// gracilibacteria
45
};
24
enum struct
genetic_code
: uint8_t {
…
};
46
}
// namespace seqan3
seqan3
The main SeqAn3 namespace.
Definition
aligned_sequence_concept.hpp:26
seqan3::genetic_code
genetic_code
Genetic codes used for translation of nucleotides into amino acids.
Definition
translation_genetic_code.hpp:25
seqan3::genetic_code::canonical
@ canonical
The Standard Code.
platform.hpp
Provides platform and dependency checks.
Hide me
Version:
main_user
main_dev
3.4.0
3.3.0
3.2.0
3.1.0
3.0.3
3.0.2
3.0.1
3.0.0
seqan3
alphabet
aminoacid
translation_genetic_code.hpp
Generated on Sun Mar 16 2025 12:48:33 for SeqAn3 by
1.9.8