aligned_sequence_builder.hpp File Reference

Provides seqan3::detail::aligned_sequence_builder. More...

#include <concepts>
#include <ranges>
#include <type_traits>
#include <vector>
#include <seqan3/alignment/aligned_sequence/aligned_sequence_concept.hpp>
#include <seqan3/alignment/decorator/gap_decorator.hpp>
#include <seqan3/alignment/matrix/detail/matrix_coordinate.hpp>
#include <seqan3/alignment/matrix/detail/trace_directions.hpp>
#include <seqan3/alphabet/gap/gapped.hpp>
#include <seqan3/core/detail/is_class_template_declarable.hpp>
#include <seqan3/utility/type_traits/concept.hpp>
#include <seqan3/utility/type_traits/lazy_conditional.hpp>
#include <seqan3/utility/views/convert.hpp>
#include <seqan3/utility/views/slice.hpp>
#include <seqan3/utility/views/type_reduce.hpp>

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Classes
class	seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >
	Builds the alignment for a given pair of sequences and the respective trace. More...
struct	seqan3::detail::make_aligned_sequence_type< range_t >
	A transformation trait that returns the correct aligned sequence type for a given sequence type. More...
struct	seqan3::detail::make_pairwise_alignment_type< first_sequence_t, second_sequence_t >
	A transformation trait that returns the correct pairwise alignment type for two given sequence types. More...
struct	seqan3::detail::aligned_sequence_builder< fst_sequence_t, sec_sequence_t >::result_type
	The result type when building the aligned sequences. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Detailed Description

Provides seqan3::detail::aligned_sequence_builder.

Author

Rene Rahn <rene.rahn AT fu-berlin.de>