input_format_concept.hpp File Reference

Provides seqan3::sequence_file_input_format and auxiliary classes. More...

#include <fstream>
#include <string>
#include <vector>
#include <seqan3/alphabet/nucleotide/dna5.hpp>
#include <seqan3/alphabet/quality/phred42.hpp>
#include <seqan3/alphabet/quality/qualified.hpp>
#include <seqan3/io/sequence_file/input_options.hpp>
#include <seqan3/utility/type_list/type_list.hpp>

Include dependency graph for sequence_file/input_format_concept.hpp:

This graph shows which files directly or indirectly include this file:

Go to the source code of this file.

Classes
interface	seqan3::sequence_file_input_format< t >
	The generic concept for sequence file in formats. More...
struct	seqan3::detail::sequence_file_input_format_exposer< format_type >
	Internal class used to expose the actual format interface to read sequence records from the file. More...

Namespaces
namespace	seqan3
	The main SeqAn3 namespace.
namespace	seqan3::detail
	The internal SeqAn3 namespace.

Concepts
concept	seqan3::detail::type_list_of_sequence_file_input_formats
	Auxiliary concept that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_input_format.

Variables
template<typename t >
constexpr bool	seqan3::detail::is_type_list_of_sequence_file_input_formats_v = false
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_input_format [default is false].
template<typename... ts>
constexpr bool	seqan3::detail::is_type_list_of_sequence_file_input_formats_v< type_list< ts... > >
	Auxiliary value metafuncton that checks whether a type is a seqan3::type_list and all types meet seqan3::sequence_file_input_format [overload].

Detailed Descriptionno-api

Provides seqan3::sequence_file_input_format and auxiliary classes.

Author

Jörg Winkler <j.winkler AT fu-berlin.de>

Hannes Hauswedell <hannes.hauswedell AT fu-berlin.de>